CRESS virus sp. ctmn412

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; unclassified Cressdnaviricota; CRESS viruses

Average proteome isoelectric point is 8.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W5N0|A0A5Q2W5N0_9VIRU Rep protein OS=CRESS virus sp. ctmn412 OX=2656688 PE=4 SV=1
MM1 pKa = 7.54ARR3 pKa = 11.84QSNSKK8 pKa = 9.66KK9 pKa = 9.5PRR11 pKa = 11.84VNRR14 pKa = 11.84SRR16 pKa = 11.84SWFFTYY22 pKa = 10.82NNPPEE27 pKa = 4.32NAWAQIIDD35 pKa = 3.88TFEE38 pKa = 4.19NDD40 pKa = 2.63QCEE43 pKa = 4.21YY44 pKa = 11.09VFQLEE49 pKa = 4.29QGDD52 pKa = 4.16TVHH55 pKa = 5.77YY56 pKa = 10.08QGVIRR61 pKa = 11.84YY62 pKa = 7.48KK63 pKa = 10.57NPRR66 pKa = 11.84EE67 pKa = 3.68NWPQISCHH75 pKa = 5.35WEE77 pKa = 3.71RR78 pKa = 11.84CISWRR83 pKa = 11.84SAIKK87 pKa = 10.51YY88 pKa = 8.62CSKK91 pKa = 9.91VQTRR95 pKa = 11.84IDD97 pKa = 4.11GPWTNIDD104 pKa = 3.36GLKK107 pKa = 10.55FRR109 pKa = 11.84DD110 pKa = 4.06TIKK113 pKa = 11.15DD114 pKa = 3.28PLQNKK119 pKa = 9.1KK120 pKa = 10.47LYY122 pKa = 9.83PFQQEE127 pKa = 3.57ILDD130 pKa = 4.27IIKK133 pKa = 9.59TDD135 pKa = 3.34SNDD138 pKa = 3.82RR139 pKa = 11.84VIYY142 pKa = 8.88WYY144 pKa = 9.54WEE146 pKa = 4.01PNGNTGKK153 pKa = 10.69SSLCKK158 pKa = 10.22HH159 pKa = 5.25IMLRR163 pKa = 11.84YY164 pKa = 8.15KK165 pKa = 10.54ACLIGGAAKK174 pKa = 10.77DD175 pKa = 3.62NFHH178 pKa = 6.74CVSSYY183 pKa = 11.64LEE185 pKa = 4.91DD186 pKa = 3.98NDD188 pKa = 5.73LKK190 pKa = 11.39VCLIDD195 pKa = 4.81IPRR198 pKa = 11.84CSMNSVSYY206 pKa = 8.56KK207 pKa = 10.04TIEE210 pKa = 4.47CIKK213 pKa = 10.7NGIIFSGKK221 pKa = 9.63YY222 pKa = 7.86EE223 pKa = 4.37SNYY226 pKa = 10.62KK227 pKa = 9.99IFNSPHH233 pKa = 7.25LIILANFPPNTDD245 pKa = 3.23MLSEE249 pKa = 4.32DD250 pKa = 2.89RR251 pKa = 11.84WVVKK255 pKa = 10.53RR256 pKa = 11.84II257 pKa = 3.46

Molecular weight: 30.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W5N0|A0A5Q2W5N0_9VIRU Rep protein OS=CRESS virus sp. ctmn412 OX=2656688 PE=4 SV=1
MM1 pKa = 6.92SAYY4 pKa = 10.2RR5 pKa = 11.84GRR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 10.09RR10 pKa = 11.84KK11 pKa = 8.01FGYY14 pKa = 9.38RR15 pKa = 11.84KK16 pKa = 9.55KK17 pKa = 10.3SYY19 pKa = 10.2RR20 pKa = 11.84RR21 pKa = 11.84NAEE24 pKa = 3.87DD25 pKa = 3.75KK26 pKa = 10.69RR27 pKa = 11.84IARR30 pKa = 11.84IAKK33 pKa = 9.87AVTSKK38 pKa = 11.04AKK40 pKa = 9.4EE41 pKa = 3.75LKK43 pKa = 10.66YY44 pKa = 10.77YY45 pKa = 9.69DD46 pKa = 4.14TIITNNTPVSGTSLVSILDD65 pKa = 3.79DD66 pKa = 3.39MAQGDD71 pKa = 4.34TEE73 pKa = 4.27STRR76 pKa = 11.84DD77 pKa = 3.29GNYY80 pKa = 10.02IIIKK84 pKa = 9.2SINVKK89 pKa = 10.46GYY91 pKa = 10.89VYY93 pKa = 10.52DD94 pKa = 3.61QGAGPRR100 pKa = 11.84DD101 pKa = 3.89TICRR105 pKa = 11.84MILIRR110 pKa = 11.84EE111 pKa = 4.16KK112 pKa = 10.86VDD114 pKa = 3.6CEE116 pKa = 4.27GNLPLVGDD124 pKa = 4.83LLDD127 pKa = 3.87TDD129 pKa = 5.87AIPSLRR135 pKa = 11.84YY136 pKa = 7.77WPNMGNFQVWWDD148 pKa = 3.35KK149 pKa = 10.94TFVIRR154 pKa = 11.84ASDD157 pKa = 4.19DD158 pKa = 3.64YY159 pKa = 11.51VTDD162 pKa = 4.03QIQHH166 pKa = 5.11SRR168 pKa = 11.84LVKK171 pKa = 10.07YY172 pKa = 9.69YY173 pKa = 10.51KK174 pKa = 9.95KK175 pKa = 10.41AKK177 pKa = 9.81KK178 pKa = 9.52PIRR181 pKa = 11.84AYY183 pKa = 10.81YY184 pKa = 10.27DD185 pKa = 3.32GVGPGVGTCKK195 pKa = 10.0RR196 pKa = 11.84GHH198 pKa = 6.36FFLITMTDD206 pKa = 3.12QVAGNRR212 pKa = 11.84PNWDD216 pKa = 3.28LKK218 pKa = 10.8VRR220 pKa = 11.84ITFTEE225 pKa = 3.88

Molecular weight: 25.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

482

225

257

241.0

28.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.357 ± 0.947

2.697 ± 0.909

7.261 ± 0.788

3.734 ± 0.711

3.32 ± 0.435

5.602 ± 1.302

1.452 ± 0.375

8.921 ± 0.614

8.299 ± 0.393

5.394 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.867 ± 0.237

6.432 ± 1.324

4.357 ± 0.534

3.527 ± 0.573

7.261 ± 1.084

6.432 ± 1.028

5.394 ± 1.144

5.394 ± 0.848

2.697 ± 0.612

5.602 ± 0.413
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski