Amino acid dipepetide frequency for Shahe picorna-like virus 10

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.612AlaAla: 4.612 ± 0.0
0.769AlaCys: 0.769 ± 0.0
2.306AlaAsp: 2.306 ± 0.0
3.843AlaGlu: 3.843 ± 0.0
3.459AlaPhe: 3.459 ± 0.0
6.533AlaGly: 6.533 ± 0.0
1.537AlaHis: 1.537 ± 0.0
3.075AlaIle: 3.075 ± 0.0
3.843AlaLys: 3.843 ± 0.0
5.38AlaLeu: 5.38 ± 0.0
1.922AlaMet: 1.922 ± 0.0
4.612AlaAsn: 4.612 ± 0.0
1.537AlaPro: 1.537 ± 0.0
5.765AlaGln: 5.765 ± 0.0
1.922AlaArg: 1.922 ± 0.0
4.228AlaSer: 4.228 ± 0.0
7.302AlaThr: 7.302 ± 0.0
6.149AlaVal: 6.149 ± 0.0
1.537AlaTrp: 1.537 ± 0.0
1.922AlaTyr: 1.922 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.384CysAla: 0.384 ± 0.0
0.384CysCys: 0.384 ± 0.0
0.769CysAsp: 0.769 ± 0.0
0.384CysGlu: 0.384 ± 0.0
1.537CysPhe: 1.537 ± 0.0
1.153CysGly: 1.153 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.769CysLys: 0.769 ± 0.0
2.306CysLeu: 2.306 ± 0.0
0.384CysMet: 0.384 ± 0.0
1.153CysAsn: 1.153 ± 0.0
1.537CysPro: 1.537 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.384CysArg: 0.384 ± 0.0
0.384CysSer: 0.384 ± 0.0
0.384CysThr: 0.384 ± 0.0
0.384CysVal: 0.384 ± 0.0
0.384CysTrp: 0.384 ± 0.0
0.384CysTyr: 0.384 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.075AspAla: 3.075 ± 0.0
0.0AspCys: 0.0 ± 0.0
2.69AspAsp: 2.69 ± 0.0
3.075AspGlu: 3.075 ± 0.0
4.612AspPhe: 4.612 ± 0.0
3.075AspGly: 3.075 ± 0.0
0.769AspHis: 0.769 ± 0.0
5.38AspIle: 5.38 ± 0.0
1.922AspLys: 1.922 ± 0.0
4.228AspLeu: 4.228 ± 0.0
1.922AspMet: 1.922 ± 0.0
3.459AspAsn: 3.459 ± 0.0
3.843AspPro: 3.843 ± 0.0
0.384AspGln: 0.384 ± 0.0
2.69AspArg: 2.69 ± 0.0
2.69AspSer: 2.69 ± 0.0
1.537AspThr: 1.537 ± 0.0
4.996AspVal: 4.996 ± 0.0
1.537AspTrp: 1.537 ± 0.0
1.153AspTyr: 1.153 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
5.765GluAla: 5.765 ± 0.0
0.384GluCys: 0.384 ± 0.0
3.459GluAsp: 3.459 ± 0.0
4.996GluGlu: 4.996 ± 0.0
3.459GluPhe: 3.459 ± 0.0
5.765GluGly: 5.765 ± 0.0
1.153GluHis: 1.153 ± 0.0
6.918GluIle: 6.918 ± 0.0
4.996GluLys: 4.996 ± 0.0
5.765GluLeu: 5.765 ± 0.0
1.537GluMet: 1.537 ± 0.0
2.306GluAsn: 2.306 ± 0.0
2.306GluPro: 2.306 ± 0.0
1.537GluGln: 1.537 ± 0.0
2.306GluArg: 2.306 ± 0.0
3.075GluSer: 3.075 ± 0.0
6.149GluThr: 6.149 ± 0.0
1.922GluVal: 1.922 ± 0.0
1.153GluTrp: 1.153 ± 0.0
1.922GluTyr: 1.922 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
4.612PheAla: 4.612 ± 0.0
1.922PheCys: 1.922 ± 0.0
3.075PheAsp: 3.075 ± 0.0
6.149PheGlu: 6.149 ± 0.0
3.459PhePhe: 3.459 ± 0.0
3.843PheGly: 3.843 ± 0.0
1.153PheHis: 1.153 ± 0.0
1.922PheIle: 1.922 ± 0.0
2.69PheLys: 2.69 ± 0.0
6.533PheLeu: 6.533 ± 0.0
1.153PheMet: 1.153 ± 0.0
1.537PheAsn: 1.537 ± 0.0
1.922PhePro: 1.922 ± 0.0
2.306PheGln: 2.306 ± 0.0
2.69PheArg: 2.69 ± 0.0
2.69PheSer: 2.69 ± 0.0
2.69PheThr: 2.69 ± 0.0
3.843PheVal: 3.843 ± 0.0
1.153PheTrp: 1.153 ± 0.0
0.769PheTyr: 0.769 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
6.533GlyAla: 6.533 ± 0.0
0.0GlyCys: 0.0 ± 0.0
3.075GlyAsp: 3.075 ± 0.0
6.149GlyGlu: 6.149 ± 0.0
3.459GlyPhe: 3.459 ± 0.0
1.537GlyGly: 1.537 ± 0.0
0.769GlyHis: 0.769 ± 0.0
1.922GlyIle: 1.922 ± 0.0
4.228GlyLys: 4.228 ± 0.0
4.996GlyLeu: 4.996 ± 0.0
2.69GlyMet: 2.69 ± 0.0
2.69GlyAsn: 2.69 ± 0.0
2.306GlyPro: 2.306 ± 0.0
1.153GlyGln: 1.153 ± 0.0
4.612GlyArg: 4.612 ± 0.0
5.38GlySer: 5.38 ± 0.0
4.228GlyThr: 4.228 ± 0.0
5.38GlyVal: 5.38 ± 0.0
1.537GlyTrp: 1.537 ± 0.0
3.075GlyTyr: 3.075 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.153HisAla: 1.153 ± 0.0
0.384HisCys: 0.384 ± 0.0
1.153HisAsp: 1.153 ± 0.0
1.537HisGlu: 1.537 ± 0.0
1.153HisPhe: 1.153 ± 0.0
0.769HisGly: 0.769 ± 0.0
0.384HisHis: 0.384 ± 0.0
0.769HisIle: 0.769 ± 0.0
0.384HisLys: 0.384 ± 0.0
1.153HisLeu: 1.153 ± 0.0
0.384HisMet: 0.384 ± 0.0
0.384HisAsn: 0.384 ± 0.0
1.537HisPro: 1.537 ± 0.0
0.384HisGln: 0.384 ± 0.0
0.0HisArg: 0.0 ± 0.0
0.769HisSer: 0.769 ± 0.0
0.769HisThr: 0.769 ± 0.0
1.153HisVal: 1.153 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.384HisTyr: 0.384 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.612IleAla: 4.612 ± 0.0
0.384IleCys: 0.384 ± 0.0
2.69IleAsp: 2.69 ± 0.0
4.996IleGlu: 4.996 ± 0.0
1.537IlePhe: 1.537 ± 0.0
5.38IleGly: 5.38 ± 0.0
0.769IleHis: 0.769 ± 0.0
3.843IleIle: 3.843 ± 0.0
1.922IleLys: 1.922 ± 0.0
4.612IleLeu: 4.612 ± 0.0
1.537IleMet: 1.537 ± 0.0
3.075IleAsn: 3.075 ± 0.0
2.306IlePro: 2.306 ± 0.0
1.153IleGln: 1.153 ± 0.0
2.69IleArg: 2.69 ± 0.0
5.765IleSer: 5.765 ± 0.0
3.459IleThr: 3.459 ± 0.0
5.765IleVal: 5.765 ± 0.0
1.153IleTrp: 1.153 ± 0.0
0.384IleTyr: 0.384 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.459LysAla: 3.459 ± 0.0
0.384LysCys: 0.384 ± 0.0
4.996LysAsp: 4.996 ± 0.0
4.228LysGlu: 4.228 ± 0.0
2.306LysPhe: 2.306 ± 0.0
3.843LysGly: 3.843 ± 0.0
1.537LysHis: 1.537 ± 0.0
3.459LysIle: 3.459 ± 0.0
4.612LysLys: 4.612 ± 0.0
3.843LysLeu: 3.843 ± 0.0
1.922LysMet: 1.922 ± 0.0
1.153LysAsn: 1.153 ± 0.0
4.996LysPro: 4.996 ± 0.0
1.153LysGln: 1.153 ± 0.0
4.228LysArg: 4.228 ± 0.0
4.612LysSer: 4.612 ± 0.0
2.306LysThr: 2.306 ± 0.0
1.922LysVal: 1.922 ± 0.0
1.153LysTrp: 1.153 ± 0.0
3.075LysTyr: 3.075 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.38LeuAla: 5.38 ± 0.0
0.384LeuCys: 0.384 ± 0.0
4.996LeuAsp: 4.996 ± 0.0
4.228LeuGlu: 4.228 ± 0.0
4.612LeuPhe: 4.612 ± 0.0
4.228LeuGly: 4.228 ± 0.0
1.922LeuHis: 1.922 ± 0.0
3.843LeuIle: 3.843 ± 0.0
5.765LeuLys: 5.765 ± 0.0
7.686LeuLeu: 7.686 ± 0.0
1.153LeuMet: 1.153 ± 0.0
3.459LeuAsn: 3.459 ± 0.0
3.075LeuPro: 3.075 ± 0.0
3.843LeuGln: 3.843 ± 0.0
5.765LeuArg: 5.765 ± 0.0
6.533LeuSer: 6.533 ± 0.0
4.612LeuThr: 4.612 ± 0.0
7.686LeuVal: 7.686 ± 0.0
1.537LeuTrp: 1.537 ± 0.0
3.843LeuTyr: 3.843 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.306MetAla: 2.306 ± 0.0
1.153MetCys: 1.153 ± 0.0
1.537MetAsp: 1.537 ± 0.0
1.922MetGlu: 1.922 ± 0.0
1.922MetPhe: 1.922 ± 0.0
2.69MetGly: 2.69 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.769MetIle: 0.769 ± 0.0
1.153MetLys: 1.153 ± 0.0
1.922MetLeu: 1.922 ± 0.0
1.153MetMet: 1.153 ± 0.0
2.306MetAsn: 2.306 ± 0.0
1.153MetPro: 1.153 ± 0.0
0.769MetGln: 0.769 ± 0.0
1.922MetArg: 1.922 ± 0.0
1.537MetSer: 1.537 ± 0.0
1.153MetThr: 1.153 ± 0.0
1.537MetVal: 1.537 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.306AsnAla: 2.306 ± 0.0
0.769AsnCys: 0.769 ± 0.0
2.306AsnAsp: 2.306 ± 0.0
3.459AsnGlu: 3.459 ± 0.0
1.922AsnPhe: 1.922 ± 0.0
2.306AsnGly: 2.306 ± 0.0
0.0AsnHis: 0.0 ± 0.0
2.306AsnIle: 2.306 ± 0.0
2.69AsnLys: 2.69 ± 0.0
3.459AsnLeu: 3.459 ± 0.0
0.769AsnMet: 0.769 ± 0.0
2.306AsnAsn: 2.306 ± 0.0
2.306AsnPro: 2.306 ± 0.0
2.69AsnGln: 2.69 ± 0.0
3.459AsnArg: 3.459 ± 0.0
2.69AsnSer: 2.69 ± 0.0
1.922AsnThr: 1.922 ± 0.0
5.765AsnVal: 5.765 ± 0.0
0.384AsnTrp: 0.384 ± 0.0
0.769AsnTyr: 0.769 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
5.38ProAla: 5.38 ± 0.0
0.769ProCys: 0.769 ± 0.0
2.306ProAsp: 2.306 ± 0.0
3.459ProGlu: 3.459 ± 0.0
3.459ProPhe: 3.459 ± 0.0
3.459ProGly: 3.459 ± 0.0
0.0ProHis: 0.0 ± 0.0
3.075ProIle: 3.075 ± 0.0
4.228ProLys: 4.228 ± 0.0
5.38ProLeu: 5.38 ± 0.0
0.384ProMet: 0.384 ± 0.0
1.537ProAsn: 1.537 ± 0.0
3.843ProPro: 3.843 ± 0.0
1.153ProGln: 1.153 ± 0.0
2.69ProArg: 2.69 ± 0.0
4.228ProSer: 4.228 ± 0.0
2.306ProThr: 2.306 ± 0.0
2.306ProVal: 2.306 ± 0.0
1.153ProTrp: 1.153 ± 0.0
1.922ProTyr: 1.922 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.228GlnAla: 4.228 ± 0.0
0.769GlnCys: 0.769 ± 0.0
1.537GlnAsp: 1.537 ± 0.0
1.537GlnGlu: 1.537 ± 0.0
1.537GlnPhe: 1.537 ± 0.0
2.306GlnGly: 2.306 ± 0.0
0.0GlnHis: 0.0 ± 0.0
4.228GlnIle: 4.228 ± 0.0
1.537GlnLys: 1.537 ± 0.0
1.537GlnLeu: 1.537 ± 0.0
2.69GlnMet: 2.69 ± 0.0
1.537GlnAsn: 1.537 ± 0.0
1.537GlnPro: 1.537 ± 0.0
1.153GlnGln: 1.153 ± 0.0
1.537GlnArg: 1.537 ± 0.0
1.922GlnSer: 1.922 ± 0.0
1.537GlnThr: 1.537 ± 0.0
1.153GlnVal: 1.153 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.537GlnTyr: 1.537 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.459ArgAla: 3.459 ± 0.0
0.769ArgCys: 0.769 ± 0.0
1.537ArgAsp: 1.537 ± 0.0
4.228ArgGlu: 4.228 ± 0.0
2.306ArgPhe: 2.306 ± 0.0
4.228ArgGly: 4.228 ± 0.0
0.769ArgHis: 0.769 ± 0.0
1.922ArgIle: 1.922 ± 0.0
2.306ArgLys: 2.306 ± 0.0
6.149ArgLeu: 6.149 ± 0.0
2.69ArgMet: 2.69 ± 0.0
1.537ArgAsn: 1.537 ± 0.0
4.612ArgPro: 4.612 ± 0.0
1.153ArgGln: 1.153 ± 0.0
2.69ArgArg: 2.69 ± 0.0
4.612ArgSer: 4.612 ± 0.0
0.769ArgThr: 0.769 ± 0.0
3.459ArgVal: 3.459 ± 0.0
0.769ArgTrp: 0.769 ± 0.0
3.075ArgTyr: 3.075 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.459SerAla: 3.459 ± 0.0
0.384SerCys: 0.384 ± 0.0
2.69SerAsp: 2.69 ± 0.0
3.459SerGlu: 3.459 ± 0.0
3.843SerPhe: 3.843 ± 0.0
4.228SerGly: 4.228 ± 0.0
2.306SerHis: 2.306 ± 0.0
5.765SerIle: 5.765 ± 0.0
5.38SerLys: 5.38 ± 0.0
6.918SerLeu: 6.918 ± 0.0
1.153SerMet: 1.153 ± 0.0
4.996SerAsn: 4.996 ± 0.0
2.306SerPro: 2.306 ± 0.0
1.922SerGln: 1.922 ± 0.0
4.228SerArg: 4.228 ± 0.0
3.075SerSer: 3.075 ± 0.0
2.69SerThr: 2.69 ± 0.0
6.149SerVal: 6.149 ± 0.0
1.922SerTrp: 1.922 ± 0.0
1.922SerTyr: 1.922 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.459ThrAla: 3.459 ± 0.0
0.769ThrCys: 0.769 ± 0.0
3.075ThrAsp: 3.075 ± 0.0
2.306ThrGlu: 2.306 ± 0.0
2.69ThrPhe: 2.69 ± 0.0
1.537ThrGly: 1.537 ± 0.0
0.384ThrHis: 0.384 ± 0.0
3.459ThrIle: 3.459 ± 0.0
4.228ThrLys: 4.228 ± 0.0
5.765ThrLeu: 5.765 ± 0.0
1.153ThrMet: 1.153 ± 0.0
1.153ThrAsn: 1.153 ± 0.0
3.843ThrPro: 3.843 ± 0.0
2.69ThrGln: 2.69 ± 0.0
2.69ThrArg: 2.69 ± 0.0
4.996ThrSer: 4.996 ± 0.0
5.765ThrThr: 5.765 ± 0.0
3.075ThrVal: 3.075 ± 0.0
0.384ThrTrp: 0.384 ± 0.0
2.306ThrTyr: 2.306 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.996ValAla: 4.996 ± 0.0
1.537ValCys: 1.537 ± 0.0
3.459ValAsp: 3.459 ± 0.0
4.612ValGlu: 4.612 ± 0.0
4.996ValPhe: 4.996 ± 0.0
5.765ValGly: 5.765 ± 0.0
0.769ValHis: 0.769 ± 0.0
2.69ValIle: 2.69 ± 0.0
3.843ValLys: 3.843 ± 0.0
4.228ValLeu: 4.228 ± 0.0
1.537ValMet: 1.537 ± 0.0
3.459ValAsn: 3.459 ± 0.0
4.996ValPro: 4.996 ± 0.0
3.075ValGln: 3.075 ± 0.0
3.459ValArg: 3.459 ± 0.0
4.228ValSer: 4.228 ± 0.0
3.843ValThr: 3.843 ± 0.0
5.765ValVal: 5.765 ± 0.0
0.769ValTrp: 0.769 ± 0.0
3.075ValTyr: 3.075 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.153TrpAla: 1.153 ± 0.0
0.384TrpCys: 0.384 ± 0.0
1.537TrpAsp: 1.537 ± 0.0
1.537TrpGlu: 1.537 ± 0.0
0.769TrpPhe: 0.769 ± 0.0
0.769TrpGly: 0.769 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.153TrpIle: 1.153 ± 0.0
1.153TrpLys: 1.153 ± 0.0
0.384TrpLeu: 0.384 ± 0.0
0.384TrpMet: 0.384 ± 0.0
1.153TrpAsn: 1.153 ± 0.0
1.153TrpPro: 1.153 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.153TrpArg: 1.153 ± 0.0
1.537TrpSer: 1.537 ± 0.0
1.153TrpThr: 1.153 ± 0.0
1.537TrpVal: 1.537 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.922TyrAla: 1.922 ± 0.0
0.769TyrCys: 0.769 ± 0.0
3.843TyrAsp: 3.843 ± 0.0
0.769TyrGlu: 0.769 ± 0.0
3.075TyrPhe: 3.075 ± 0.0
2.306TyrGly: 2.306 ± 0.0
0.384TyrHis: 0.384 ± 0.0
1.537TyrIle: 1.537 ± 0.0
1.537TyrLys: 1.537 ± 0.0
2.306TyrLeu: 2.306 ± 0.0
0.0TyrMet: 0.0 ± 0.0
0.769TyrAsn: 0.769 ± 0.0
1.922TyrPro: 1.922 ± 0.0
1.537TyrGln: 1.537 ± 0.0
1.922TyrArg: 1.922 ± 0.0
3.843TyrSer: 3.843 ± 0.0
1.153TyrThr: 1.153 ± 0.0
1.153TyrVal: 1.153 ± 0.0
0.769TyrTrp: 0.769 ± 0.0
1.153TyrTyr: 1.153 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2603 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski