Opisthorchis viverrini

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda; Digenea; Opisthorchiida; Opisthorchiata; Opisthorchiidae; Opisthorchis

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16307 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A075A5H0|A0A075A5H0_9TREM Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_02786 PE=4 SV=1
MM1 pKa = 7.07VAVCGVSPSMVVRR14 pKa = 11.84QPNVSLFEE22 pKa = 4.23GSQNLDD28 pKa = 2.98VGTVVIDD35 pKa = 3.62EE36 pKa = 4.85RR37 pKa = 11.84CFTWEE42 pKa = 3.78GQSRR46 pKa = 11.84QFSVPYY52 pKa = 9.78QQITLHH58 pKa = 6.88AISKK62 pKa = 9.42DD63 pKa = 3.34PVMAAGDD70 pKa = 3.67QPAPEE75 pKa = 4.04NTFPHH80 pKa = 6.17PHH82 pKa = 6.74LLVMIDD88 pKa = 3.25GDD90 pKa = 3.99RR91 pKa = 11.84PYY93 pKa = 11.17SPPHH97 pKa = 6.5PNGQIAGEE105 pKa = 3.97PMAIDD110 pKa = 3.98GAEE113 pKa = 4.06HH114 pKa = 7.22SDD116 pKa = 3.21TDD118 pKa = 3.96GSNEE122 pKa = 4.08SQEE125 pKa = 4.67DD126 pKa = 3.51ATSQGRR132 pKa = 11.84ASDD135 pKa = 4.22CPGEE139 pKa = 4.2TTILRR144 pKa = 11.84FVPQDD149 pKa = 3.54PNALDD154 pKa = 3.26TMYY157 pKa = 11.18AALAEE162 pKa = 4.34CQALNPDD169 pKa = 3.64STDD172 pKa = 3.17NSSTSDD178 pKa = 3.63VEE180 pKa = 5.0DD181 pKa = 5.55DD182 pKa = 4.53GDD184 pKa = 4.43DD185 pKa = 3.8FCFLPDD191 pKa = 4.1IDD193 pKa = 5.69SLDD196 pKa = 3.57SDD198 pKa = 4.59QYY200 pKa = 12.01ADD202 pKa = 3.99DD203 pKa = 3.87

Molecular weight: 21.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A074ZIQ9|A0A074ZIQ9_9TREM Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_05731 PE=4 SV=1
KKK2 pKa = 10.54LTRR5 pKa = 11.84LLKKK9 pKa = 9.5LRR11 pKa = 11.84QPTTGCTLPLRR22 pKa = 11.84VHHH25 pKa = 6.24LLNDDD30 pKa = 3.33HH31 pKa = 6.71SSFKKK36 pKa = 10.01QRR38 pKa = 11.84IFNPMISRR46 pKa = 11.84NLVLRR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84FRR55 pKa = 11.84KKK57 pKa = 8.49IGPRR61 pKa = 11.84QFTRR65 pKa = 11.84FAGRR69 pKa = 11.84SPIAVSPVTGRR80 pKa = 11.84PLVSARR86 pKa = 11.84

Molecular weight: 10.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16307

0

16307

7070076

30

10941

433.6

48.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.774 ± 0.016

2.182 ± 0.012

5.143 ± 0.022

5.729 ± 0.021

3.764 ± 0.014

5.554 ± 0.022

2.81 ± 0.009

4.619 ± 0.013

4.457 ± 0.019

9.814 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.041 ± 0.008

4.086 ± 0.011

6.018 ± 0.021

4.328 ± 0.012

6.664 ± 0.016

9.394 ± 0.033

6.424 ± 0.019

6.36 ± 0.016

1.207 ± 0.006

2.621 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski