Culex rhabdo-like virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ohlsrhavirus; Culex ohlsrhavirus

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Z2RTB8|A0A1Z2RTB8_9RHAB Glycoprotein OS=Culex rhabdo-like virus OX=2010277 PE=4 SV=1
MM1 pKa = 7.2IHH3 pKa = 6.8NSEE6 pKa = 4.25LLANAFLMIALISWTTCEE24 pKa = 4.16DD25 pKa = 3.01QSHH28 pKa = 5.33NMKK31 pKa = 10.21ILFPTSSKK39 pKa = 10.69IEE41 pKa = 3.84WHH43 pKa = 6.77DD44 pKa = 3.61VSPSNLICSTARR56 pKa = 11.84IHH58 pKa = 6.72QNIAHH63 pKa = 6.64GLSFVVNRR71 pKa = 11.84PVIGKK76 pKa = 9.18DD77 pKa = 3.16PKK79 pKa = 10.65ISGTLCVAIEE89 pKa = 4.03LTTTCSKK96 pKa = 11.22GFFGGVDD103 pKa = 3.6VTLSTSPADD112 pKa = 3.93LSEE115 pKa = 4.17EE116 pKa = 4.04NCRR119 pKa = 11.84KK120 pKa = 10.12EE121 pKa = 4.47IASQNQGEE129 pKa = 4.54FSSAEE134 pKa = 3.97HH135 pKa = 6.02PQPVCSWMKK144 pKa = 9.63TSSTSRR150 pKa = 11.84TVIHH154 pKa = 6.73LSKK157 pKa = 10.1MDD159 pKa = 3.47AHH161 pKa = 6.94YY162 pKa = 11.0DD163 pKa = 3.73PYY165 pKa = 11.47SDD167 pKa = 4.16TLFSSIFLSGKK178 pKa = 9.55CRR180 pKa = 11.84ASFCQTVFEE189 pKa = 4.14NRR191 pKa = 11.84LWIPQEE197 pKa = 4.11SLTEE201 pKa = 4.12YY202 pKa = 10.62CSTEE206 pKa = 3.88HH207 pKa = 6.71LVEE210 pKa = 4.32SSMMIYY216 pKa = 10.38NSSSNGSSLWSPDD229 pKa = 2.86FDD231 pKa = 3.36ISEE234 pKa = 4.24EE235 pKa = 4.01EE236 pKa = 4.72KK237 pKa = 9.93PCIMNFCGQKK247 pKa = 10.27GLRR250 pKa = 11.84FASGEE255 pKa = 3.98WVALSRR261 pKa = 11.84QSIPKK266 pKa = 9.18APWVGEE272 pKa = 4.09HH273 pKa = 6.92FYY275 pKa = 11.0HH276 pKa = 7.51LKK278 pKa = 10.87DD279 pKa = 3.91CDD281 pKa = 3.28GHH283 pKa = 4.85TTVNLVEE290 pKa = 3.91AHH292 pKa = 5.8QDD294 pKa = 3.23LRR296 pKa = 11.84HH297 pKa = 4.75MTKK300 pKa = 10.01VVLEE304 pKa = 4.11EE305 pKa = 5.56FIDD308 pKa = 4.17EE309 pKa = 4.2QCEE312 pKa = 4.01MTVNKK317 pKa = 10.21LKK319 pKa = 10.04EE320 pKa = 3.98GNMISRR326 pKa = 11.84IEE328 pKa = 4.07LQTLYY333 pKa = 10.36PRR335 pKa = 11.84TPGFHH340 pKa = 7.03PIYY343 pKa = 10.02RR344 pKa = 11.84YY345 pKa = 7.48TQGKK349 pKa = 8.81FLMGMAHH356 pKa = 6.02YY357 pKa = 9.48SWVSIEE363 pKa = 3.96SSEE366 pKa = 3.85IFPYY370 pKa = 10.37ISIRR374 pKa = 11.84SSLNKK379 pKa = 10.21SIEE382 pKa = 3.96YY383 pKa = 10.46SYY385 pKa = 8.35WTMDD389 pKa = 2.86NRR391 pKa = 11.84TQIIDD396 pKa = 4.1GPNGLYY402 pKa = 10.16ILDD405 pKa = 3.83HH406 pKa = 5.28QLIYY410 pKa = 10.87GLEE413 pKa = 4.03EE414 pKa = 3.64EE415 pKa = 4.46QKK417 pKa = 10.43FRR419 pKa = 11.84RR420 pKa = 11.84ILSKK424 pKa = 10.43SSKK427 pKa = 10.12HH428 pKa = 5.23VFPILPEE435 pKa = 3.91QKK437 pKa = 9.37TNGQSFVRR445 pKa = 11.84LLSHH449 pKa = 6.53TSYY452 pKa = 11.2SFSDD456 pKa = 3.8DD457 pKa = 3.28ASLVDD462 pKa = 4.92VIWHH466 pKa = 6.32PVLTCLIITAILLPSMIGIIWCTKK490 pKa = 8.19NQVFIKK496 pKa = 9.94KK497 pKa = 9.61LKK499 pKa = 10.57SFAQRR504 pKa = 11.84DD505 pKa = 3.89VEE507 pKa = 4.0PSEE510 pKa = 5.42DD511 pKa = 3.21ISEE514 pKa = 4.54AEE516 pKa = 3.88GEE518 pKa = 4.47YY519 pKa = 10.78FNPP522 pKa = 4.24

Molecular weight: 59.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Z2RT82|A0A1Z2RT82_9RHAB Nucleocapsid protein OS=Culex rhabdo-like virus OX=2010277 PE=4 SV=1
MM1 pKa = 7.39NNSTQIKK8 pKa = 9.75KK9 pKa = 8.53KK10 pKa = 8.03TFNMCVSKK18 pKa = 11.04VLLVNATIEE27 pKa = 3.98IKK29 pKa = 10.6YY30 pKa = 10.13RR31 pKa = 11.84NPPKK35 pKa = 9.49TCKK38 pKa = 10.07EE39 pKa = 4.32LIHH42 pKa = 7.48SLEE45 pKa = 4.52LIKK48 pKa = 11.12DD49 pKa = 3.53GGNWYY54 pKa = 10.43QSDD57 pKa = 3.68QEE59 pKa = 4.69FIFFFYY65 pKa = 10.42ILSGYY70 pKa = 6.08TCKK73 pKa = 10.21HH74 pKa = 4.2VHH76 pKa = 6.1HH77 pKa = 7.16LGGFHH82 pKa = 7.89LYY84 pKa = 10.0RR85 pKa = 11.84GCISGAFEE93 pKa = 4.34IKK95 pKa = 10.35FKK97 pKa = 10.85GISPRR102 pKa = 11.84FPLTYY107 pKa = 9.44EE108 pKa = 4.0YY109 pKa = 10.49QGEE112 pKa = 4.5GLGMIPDD119 pKa = 4.08TLISFSLVAEE129 pKa = 4.41EE130 pKa = 4.83SLVSPISLWGYY141 pKa = 9.04IIKK144 pKa = 10.61GSPSKK149 pKa = 10.5YY150 pKa = 9.25RR151 pKa = 11.84KK152 pKa = 9.81SNEE155 pKa = 3.93IKK157 pKa = 10.05WGIFDD162 pKa = 4.55NFPLSVKK169 pKa = 10.41GKK171 pKa = 10.35DD172 pKa = 3.41GIFTIRR178 pKa = 11.84RR179 pKa = 11.84KK180 pKa = 7.73TT181 pKa = 3.26

Molecular weight: 20.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3665

181

2119

733.0

83.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.73 ± 0.798

1.583 ± 0.348

5.293 ± 0.533

6.276 ± 0.516

4.475 ± 0.41

5.812 ± 0.458

2.456 ± 0.26

6.603 ± 0.633

6.439 ± 0.749

9.168 ± 0.811

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.647 ± 0.221

4.529 ± 0.29

4.748 ± 0.465

3.356 ± 0.294

5.184 ± 0.609

8.759 ± 0.733

5.703 ± 0.274

5.921 ± 0.34

1.692 ± 0.201

3.629 ± 0.314
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski