Candidatus Cryosericum terrychapinii

Taxonomy: cellular organisms; Bacteria; Caldiserica/Cryosericota group; Candidatus Cryosericota; Candidatus Cryosericia; Candidatus Cryosericales; Candidatus Cryosericaceae; Candidatus Cryosericum

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1392 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A398CSL0|A0A398CSL0_9BACT Putative gluconeogenesis factor OS=Candidatus Cryosericum terrychapinii OX=2290919 GN=yvcK PE=3 SV=1
MM1 pKa = 7.51EE2 pKa = 4.77KK3 pKa = 9.9WICTVCGYY11 pKa = 11.0VYY13 pKa = 10.67DD14 pKa = 4.22PAIGDD19 pKa = 3.72STQEE23 pKa = 3.67INPGVKK29 pKa = 10.11FEE31 pKa = 5.3DD32 pKa = 4.33LPEE35 pKa = 4.13SWVCPDD41 pKa = 3.99CGAAKK46 pKa = 10.53DD47 pKa = 4.09LFEE50 pKa = 4.61KK51 pKa = 10.88AA52 pKa = 3.77

Molecular weight: 5.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A398D3A1|A0A398D3A1_9BACT DUF4129 domain-containing protein OS=Candidatus Cryosericum terrychapinii OX=2290919 GN=SMC7_04750 PE=4 SV=1
MM1 pKa = 7.38RR2 pKa = 11.84TTYY5 pKa = 10.57SPKK8 pKa = 8.82NRR10 pKa = 11.84KK11 pKa = 8.86RR12 pKa = 11.84NRR14 pKa = 11.84TLGFLNRR21 pKa = 11.84MRR23 pKa = 11.84SPGGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.59GRR39 pKa = 11.84KK40 pKa = 8.92KK41 pKa = 10.8LIVAA45 pKa = 4.85

Molecular weight: 5.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1392

0

1392

444009

29

1772

319.0

34.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.703 ± 0.07

1.05 ± 0.024

5.453 ± 0.049

5.767 ± 0.075

3.745 ± 0.042

8.141 ± 0.057

2.037 ± 0.032

5.636 ± 0.059

3.998 ± 0.057

10.124 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.647 ± 0.03

2.812 ± 0.035

4.454 ± 0.042

3.29 ± 0.036

6.07 ± 0.067

6.287 ± 0.05

6.199 ± 0.087

8.701 ± 0.052

1.127 ± 0.029

2.759 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski