Thermosyntropha lipolytica DSM 11003

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Syntrophomonadaceae; Thermosyntropha; Thermosyntropha lipolytica

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2141 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5MVR3|A0A1M5MVR3_9FIRM Uncharacterized protein OS=Thermosyntropha lipolytica DSM 11003 OX=1123382 GN=SAMN02745221_01037 PE=4 SV=1
MM1 pKa = 7.45RR2 pKa = 11.84VEE4 pKa = 4.62KK5 pKa = 10.81GLLYY9 pKa = 10.45TEE11 pKa = 3.72NHH13 pKa = 5.51EE14 pKa = 4.22WLKK17 pKa = 11.14VEE19 pKa = 4.38GDD21 pKa = 3.2KK22 pKa = 11.12AYY24 pKa = 9.91IGITDD29 pKa = 3.69YY30 pKa = 11.44AQEE33 pKa = 4.1HH34 pKa = 6.63LGDD37 pKa = 3.53IVFVEE42 pKa = 4.5LPEE45 pKa = 4.43VDD47 pKa = 4.49AEE49 pKa = 4.04FDD51 pKa = 3.57ADD53 pKa = 3.56EE54 pKa = 5.23GIAVIEE60 pKa = 4.26SVKK63 pKa = 10.61AVSSVYY69 pKa = 10.4TPVACTILEE78 pKa = 4.25VNEE81 pKa = 4.14EE82 pKa = 4.24LEE84 pKa = 4.48GAPEE88 pKa = 4.56LLNEE92 pKa = 4.29DD93 pKa = 5.43CYY95 pKa = 11.88ANWIALISIKK105 pKa = 11.08DD106 pKa = 3.41MDD108 pKa = 4.67GLNKK112 pKa = 10.5LMDD115 pKa = 4.22AEE117 pKa = 4.53AYY119 pKa = 8.49EE120 pKa = 4.32AFCAEE125 pKa = 4.15QEE127 pKa = 4.32EE128 pKa = 4.64

Molecular weight: 14.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5S4X8|A0A1M5S4X8_9FIRM Transposase OS=Thermosyntropha lipolytica DSM 11003 OX=1123382 GN=SAMN02745221_02168 PE=4 SV=1
MM1 pKa = 7.65DD2 pKa = 3.59QYY4 pKa = 11.78HH5 pKa = 7.71LIRR8 pKa = 11.84HH9 pKa = 6.43LYY11 pKa = 9.15LVEE14 pKa = 4.33GMSQRR19 pKa = 11.84AIAKK23 pKa = 9.45QLGISRR29 pKa = 11.84NTVRR33 pKa = 11.84RR34 pKa = 11.84YY35 pKa = 10.26CKK37 pKa = 10.44GEE39 pKa = 3.72QVPWEE44 pKa = 4.1RR45 pKa = 11.84KK46 pKa = 6.67PVKK49 pKa = 9.81RR50 pKa = 11.84APSVITPGEE59 pKa = 4.1ALSLLPTWSSRR70 pKa = 11.84VGQKK74 pKa = 8.85SFRR77 pKa = 11.84ILCC80 pKa = 4.12

Molecular weight: 9.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2141

0

2141

645175

39

2074

301.3

33.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.818 ± 0.057

1.095 ± 0.024

5.008 ± 0.04

8.191 ± 0.068

4.048 ± 0.039

7.315 ± 0.045

1.628 ± 0.023

8.163 ± 0.04

7.277 ± 0.05

10.01 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.692 ± 0.023

3.939 ± 0.034

3.839 ± 0.033

2.802 ± 0.027

5.159 ± 0.043

4.846 ± 0.034

4.31 ± 0.032

7.118 ± 0.043

0.945 ± 0.018

3.797 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski