Crocuta crocuta papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Lambdapapillomavirus; Lambdapapillomavirus 5

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7EZS5|J7EZS5_9PAPI Major capsid protein L1 OS=Crocuta crocuta papillomavirus 1 OX=1104917 GN=L1 PE=3 SV=1
MM1 pKa = 7.48RR2 pKa = 11.84GEE4 pKa = 4.3RR5 pKa = 11.84PTLQEE10 pKa = 3.59IVLTEE15 pKa = 4.12LPEE18 pKa = 5.85HH19 pKa = 7.04IDD21 pKa = 4.05LEE23 pKa = 4.66CHH25 pKa = 4.61EE26 pKa = 4.4QMPEE30 pKa = 3.87EE31 pKa = 4.29EE32 pKa = 4.68EE33 pKa = 4.09EE34 pKa = 4.22EE35 pKa = 4.27EE36 pKa = 4.94PISRR40 pKa = 11.84DD41 pKa = 3.27CFRR44 pKa = 11.84VATCCGYY51 pKa = 10.16CRR53 pKa = 11.84KK54 pKa = 9.42EE55 pKa = 3.93LRR57 pKa = 11.84FLCLSSAAQVRR68 pKa = 11.84SLEE71 pKa = 4.12SLLLQDD77 pKa = 5.18FSFICTSCVVKK88 pKa = 10.75KK89 pKa = 10.51KK90 pKa = 10.4LNHH93 pKa = 6.32GGG95 pKa = 3.38

Molecular weight: 10.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7F282|J7F282_9PAPI Protein E6 OS=Crocuta crocuta papillomavirus 1 OX=1104917 GN=E6 PE=3 SV=1
MM1 pKa = 7.12EE2 pKa = 4.97TLSQLLEE9 pKa = 4.13SLQNDD14 pKa = 3.62MLTLYY19 pKa = 10.51EE20 pKa = 4.64KK21 pKa = 10.98DD22 pKa = 3.32SDD24 pKa = 4.03RR25 pKa = 11.84LTDD28 pKa = 5.5QITHH32 pKa = 4.64WHH34 pKa = 6.65LNRR37 pKa = 11.84KK38 pKa = 7.42EE39 pKa = 3.61QTLYY43 pKa = 10.55YY44 pKa = 10.2GARR47 pKa = 11.84QRR49 pKa = 11.84GITRR53 pKa = 11.84IGYY56 pKa = 8.13NHH58 pKa = 6.12VPSLAASQQRR68 pKa = 11.84AKK70 pKa = 10.5QAIEE74 pKa = 3.67QEE76 pKa = 4.49LILRR80 pKa = 11.84TLLDD84 pKa = 3.65SEE86 pKa = 4.84FGEE89 pKa = 4.61EE90 pKa = 4.28PWNLMQTSRR99 pKa = 11.84EE100 pKa = 3.89RR101 pKa = 11.84LLAPPAYY108 pKa = 9.23CFKK111 pKa = 10.91KK112 pKa = 10.23GGHH115 pKa = 6.32NIDD118 pKa = 3.28VKK120 pKa = 11.13FNNDD124 pKa = 2.83SQNIARR130 pKa = 11.84YY131 pKa = 8.55VLWDD135 pKa = 4.47FIYY138 pKa = 11.14YY139 pKa = 9.63QDD141 pKa = 5.73SEE143 pKa = 4.77DD144 pKa = 3.04KK145 pKa = 9.6WRR147 pKa = 11.84VSKK150 pKa = 11.04GYY152 pKa = 10.45VDD154 pKa = 3.56EE155 pKa = 4.65TGLYY159 pKa = 10.09YY160 pKa = 9.91EE161 pKa = 4.71TEE163 pKa = 4.29LGIKK167 pKa = 9.32IYY169 pKa = 10.62YY170 pKa = 10.12VNFHH174 pKa = 7.38DD175 pKa = 5.04EE176 pKa = 3.7AAKK179 pKa = 10.69YY180 pKa = 10.31GNSDD184 pKa = 3.02VYY186 pKa = 11.04EE187 pKa = 4.26VVKK190 pKa = 10.14TPLTTPVSTSTSGLNTASPGPHH212 pKa = 6.56SDD214 pKa = 2.59SGTPRR219 pKa = 11.84RR220 pKa = 11.84KK221 pKa = 8.24TSTPVKK227 pKa = 9.95SRR229 pKa = 11.84KK230 pKa = 9.26KK231 pKa = 9.82SGRR234 pKa = 11.84HH235 pKa = 5.54ALPKK239 pKa = 9.37TPVGRR244 pKa = 11.84RR245 pKa = 11.84FGRR248 pKa = 11.84RR249 pKa = 11.84KK250 pKa = 10.09GEE252 pKa = 4.09RR253 pKa = 11.84VSTATPSSKK262 pKa = 10.3PPSPEE267 pKa = 3.78QIGSSHH273 pKa = 5.86QSVPVRR279 pKa = 11.84GGGGRR284 pKa = 11.84LGRR287 pKa = 11.84LLAEE291 pKa = 4.8ARR293 pKa = 11.84DD294 pKa = 3.98PPCIVIRR301 pKa = 11.84GDD303 pKa = 3.65PNTVKK308 pKa = 10.68CLRR311 pKa = 11.84YY312 pKa = 9.59RR313 pKa = 11.84FKK315 pKa = 10.78QQYY318 pKa = 9.82QNLFWGVSTTWSWTWKK334 pKa = 10.29GSEE337 pKa = 3.66QSKK340 pKa = 9.41RR341 pKa = 11.84SRR343 pKa = 11.84IIFLFTDD350 pKa = 3.48DD351 pKa = 4.01DD352 pKa = 3.83QRR354 pKa = 11.84EE355 pKa = 4.23KK356 pKa = 11.02FLNTVKK362 pKa = 10.53LPKK365 pKa = 9.94SVSYY369 pKa = 10.2FLGSFNDD376 pKa = 3.93YY377 pKa = 11.27

Molecular weight: 43.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2351

95

590

335.9

37.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.572 ± 0.593

2.467 ± 0.94

5.87 ± 0.395

6.423 ± 0.789

4.764 ± 0.352

5.827 ± 0.716

2.212 ± 0.267

5.359 ± 0.614

6.21 ± 0.561

9.485 ± 1.23

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.276 ± 0.231

4.679 ± 0.577

5.955 ± 0.819

3.913 ± 0.414

5.317 ± 0.616

7.571 ± 0.735

6.423 ± 0.515

5.827 ± 0.59

1.446 ± 0.347

3.403 ± 0.477
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski