Tamilnaduibacter salinus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Tamilnaduibacter

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3136 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A2I0E8|A0A2A2I0E8_9ALTE Serine hydroxymethyltransferase OS=Tamilnaduibacter salinus OX=1484056 GN=glyA PE=3 SV=1
MM1 pKa = 7.66PRR3 pKa = 11.84TIPVLACITTLTLLSACGGGSQNLDD28 pKa = 3.26TGSGGSCGAAFNPAATVRR46 pKa = 11.84LSLGNFTISDD56 pKa = 4.35PEE58 pKa = 4.19PLSEE62 pKa = 4.55TLLSDD67 pKa = 4.62LAQGTQPNSSATPAKK82 pKa = 9.75QDD84 pKa = 3.26YY85 pKa = 9.48GNQVHH90 pKa = 6.96SDD92 pKa = 4.32LLTQSQPFIGSTSDD106 pKa = 2.85EE107 pKa = 5.04DD108 pKa = 4.07YY109 pKa = 11.18NQARR113 pKa = 11.84NPYY116 pKa = 10.2DD117 pKa = 3.59LMNKK121 pKa = 9.34VIASGEE127 pKa = 3.92VDD129 pKa = 3.28NFNAGRR135 pKa = 11.84GYY137 pKa = 10.35ISDD140 pKa = 5.37CIDD143 pKa = 3.38AGNPAEE149 pKa = 4.38YY150 pKa = 10.61SNSANNVTIQFNEE163 pKa = 4.07VQNEE167 pKa = 3.93NTTEE171 pKa = 3.97QFRR174 pKa = 11.84YY175 pKa = 8.41PQLRR179 pKa = 11.84WVYY182 pKa = 10.14TPATTNTVQRR192 pKa = 11.84VVRR195 pKa = 11.84YY196 pKa = 9.62QGGDD200 pKa = 3.31FLDD203 pKa = 4.34GLTVGSSFASSTFSTTGYY221 pKa = 9.8NAPQRR226 pKa = 11.84VEE228 pKa = 3.81ASFAADD234 pKa = 3.84SNDD237 pKa = 3.25EE238 pKa = 4.58DD239 pKa = 4.14SQQSLIIVQRR249 pKa = 11.84FVDD252 pKa = 4.15PDD254 pKa = 3.57QPDD257 pKa = 3.41DD258 pKa = 5.06RR259 pKa = 11.84QDD261 pKa = 2.66EE262 pKa = 4.34WLYY265 pKa = 11.52SDD267 pKa = 3.5TTGTTFDD274 pKa = 3.64FAGATDD280 pKa = 3.69VDD282 pKa = 4.36CARR285 pKa = 11.84VLVDD289 pKa = 3.87YY290 pKa = 10.95DD291 pKa = 3.47MQKK294 pKa = 11.07AYY296 pKa = 11.08VFTSSDD302 pKa = 3.72EE303 pKa = 4.49PSDD306 pKa = 3.77SPAYY310 pKa = 10.02CGNRR314 pKa = 11.84AMDD317 pKa = 4.36EE318 pKa = 4.15SDD320 pKa = 3.63NDD322 pKa = 3.84YY323 pKa = 8.06PTQPVSEE330 pKa = 4.37RR331 pKa = 11.84KK332 pKa = 7.51QQ333 pKa = 3.14

Molecular weight: 36.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A2I7A1|A0A2A2I7A1_9ALTE NADH dehydrogenase I subunit E OS=Tamilnaduibacter salinus OX=1484056 GN=CF392_02130 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84AHH16 pKa = 6.12GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 9.32VIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.91GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3136

0

3136

1009489

31

2419

321.9

35.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.75 ± 0.047

0.89 ± 0.013

6.403 ± 0.041

6.51 ± 0.041

3.58 ± 0.03

7.927 ± 0.039

2.344 ± 0.023

4.829 ± 0.03

2.921 ± 0.036

10.504 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.5 ± 0.017

2.992 ± 0.026

4.89 ± 0.029

4.13 ± 0.028

7.408 ± 0.049

5.912 ± 0.029

5.381 ± 0.03

7.245 ± 0.041

1.409 ± 0.02

2.474 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski