Lepus americanus faeces associated genomovirus SHP11

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; unclassified Genomoviridae

Average proteome isoelectric point is 7.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CJA9|A0A2Z5CJA9_9VIRU Replication-associated protein OS=Lepus americanus faeces associated genomovirus SHP11 OX=2219117 PE=4 SV=1
MM1 pKa = 7.0VRR3 pKa = 11.84RR4 pKa = 11.84FKK6 pKa = 11.09LEE8 pKa = 3.71EE9 pKa = 3.67VSYY12 pKa = 11.61VLLTYY17 pKa = 7.57PTTPDD22 pKa = 3.06GFDD25 pKa = 3.24PQGIIDD31 pKa = 4.06AVVAAGAVYY40 pKa = 10.25RR41 pKa = 11.84LGRR44 pKa = 11.84EE45 pKa = 3.68LHH47 pKa = 6.88ADD49 pKa = 4.13GKK51 pKa = 8.99PHH53 pKa = 5.26YY54 pKa = 10.02HH55 pKa = 7.07CFVQWADD62 pKa = 3.92PYY64 pKa = 11.14SDD66 pKa = 4.16PDD68 pKa = 3.39AGGTFTVGGRR78 pKa = 11.84RR79 pKa = 11.84PNIKK83 pKa = 10.01KK84 pKa = 10.52FSANPGRR91 pKa = 11.84RR92 pKa = 11.84WDD94 pKa = 3.78YY95 pKa = 10.72VGKK98 pKa = 9.62HH99 pKa = 5.37AGKK102 pKa = 10.38KK103 pKa = 8.76EE104 pKa = 3.58GHH106 pKa = 6.6FIIGDD111 pKa = 3.42QCEE114 pKa = 4.28RR115 pKa = 11.84PSEE118 pKa = 4.14GDD120 pKa = 2.73VDD122 pKa = 3.89TRR124 pKa = 11.84SQSDD128 pKa = 2.78IWSEE132 pKa = 3.99IIGCTTQEE140 pKa = 4.15EE141 pKa = 5.17FWSKK145 pKa = 10.51LAALAPKK152 pKa = 10.22QLGCNFGSLKK162 pKa = 10.8LYY164 pKa = 10.76VDD166 pKa = 4.13WKK168 pKa = 10.36YY169 pKa = 11.42KK170 pKa = 9.0PAQEE174 pKa = 4.7IYY176 pKa = 7.47EE177 pKa = 4.45TPQGTFDD184 pKa = 3.6VPGVLQEE191 pKa = 4.18PKK193 pKa = 10.71GLVLFGPTRR202 pKa = 11.84IGKK205 pKa = 6.42TVWARR210 pKa = 11.84SLADD214 pKa = 3.15HH215 pKa = 7.22AYY217 pKa = 10.45FGGLFNLDD225 pKa = 3.99DD226 pKa = 4.71FSADD230 pKa = 3.03GAQYY234 pKa = 11.09AIFDD238 pKa = 5.15DD239 pKa = 3.83ISGGFSFFPSYY250 pKa = 9.2KK251 pKa = 9.26QWMGGQYY258 pKa = 10.39QFTVTDD264 pKa = 3.91KK265 pKa = 10.76YY266 pKa = 10.28KK267 pKa = 10.97HH268 pKa = 5.95KK269 pKa = 10.37VTLRR273 pKa = 11.84WGRR276 pKa = 11.84PTIWLCNTDD285 pKa = 3.49PRR287 pKa = 11.84EE288 pKa = 3.99DD289 pKa = 3.6HH290 pKa = 6.54YY291 pKa = 11.83KK292 pKa = 10.08PGAMPDD298 pKa = 3.87FAWMEE303 pKa = 4.29EE304 pKa = 3.69NCVFYY309 pKa = 10.62EE310 pKa = 4.02CRR312 pKa = 11.84DD313 pKa = 4.1TIFHH317 pKa = 7.24ASTT320 pKa = 3.35

Molecular weight: 36.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CJA9|A0A2Z5CJA9_9VIRU Replication-associated protein OS=Lepus americanus faeces associated genomovirus SHP11 OX=2219117 PE=4 SV=1
MM1 pKa = 6.86AQRR4 pKa = 11.84RR5 pKa = 11.84KK6 pKa = 8.39FTSYY10 pKa = 9.1RR11 pKa = 11.84AKK13 pKa = 10.33RR14 pKa = 11.84RR15 pKa = 11.84TRR17 pKa = 11.84RR18 pKa = 11.84SARR21 pKa = 11.84PAKK24 pKa = 9.93YY25 pKa = 9.96GGRR28 pKa = 11.84KK29 pKa = 9.1RR30 pKa = 11.84RR31 pKa = 11.84WTKK34 pKa = 7.47TRR36 pKa = 11.84KK37 pKa = 7.67TSRR40 pKa = 11.84PMTKK44 pKa = 10.02KK45 pKa = 10.47RR46 pKa = 11.84ILNTTSRR53 pKa = 11.84KK54 pKa = 9.22KK55 pKa = 10.55RR56 pKa = 11.84NGMLTWSNTNLNGTVRR72 pKa = 11.84PIASGNAYY80 pKa = 9.56VAATNVGVFVYY91 pKa = 10.58CPTALHH97 pKa = 6.86LDD99 pKa = 3.81GDD101 pKa = 4.32SLLRR105 pKa = 11.84NPAARR110 pKa = 11.84TSSTIFAKK118 pKa = 10.6GLSEE122 pKa = 4.2RR123 pKa = 11.84MRR125 pKa = 11.84IQTSSGLPWFHH136 pKa = 6.89RR137 pKa = 11.84RR138 pKa = 11.84VCFTTKK144 pKa = 10.27GPNAFNVINSTDD156 pKa = 3.46TPTVPWAPYY165 pKa = 10.13LDD167 pKa = 3.52TSNGIEE173 pKa = 3.69RR174 pKa = 11.84PMINLDD180 pKa = 3.28INAMPGTLGSQYY192 pKa = 11.63GLLFKK197 pKa = 10.71GRR199 pKa = 11.84QGVDD203 pKa = 2.71WNDD206 pKa = 3.71TIIAPLDD213 pKa = 3.57TARR216 pKa = 11.84VTVKK220 pKa = 10.55YY221 pKa = 10.73DD222 pKa = 3.46KK223 pKa = 10.63TWTLQSGNANGVIRR237 pKa = 11.84EE238 pKa = 4.08RR239 pKa = 11.84KK240 pKa = 8.44LWHH243 pKa = 6.47PMNHH247 pKa = 4.99NVVYY251 pKa = 10.82DD252 pKa = 3.82EE253 pKa = 5.76DD254 pKa = 4.24EE255 pKa = 4.88DD256 pKa = 5.73GEE258 pKa = 4.69VQGTSYY264 pKa = 11.49YY265 pKa = 11.06SVDD268 pKa = 3.46SKK270 pKa = 11.82AGMGDD275 pKa = 3.89YY276 pKa = 10.83YY277 pKa = 11.6VVDD280 pKa = 4.56FFQAGVGGTSTDD292 pKa = 4.19LISVNASSTMYY303 pKa = 9.27WHH305 pKa = 7.08EE306 pKa = 4.08KK307 pKa = 9.5

Molecular weight: 34.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

627

307

320

313.5

35.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.858 ± 0.013

1.435 ± 0.577

6.539 ± 0.977

3.668 ± 1.021

4.785 ± 1.363

9.091 ± 0.697

2.233 ± 0.445

4.147 ± 0.175

5.901 ± 0.028

5.742 ± 0.089

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.073 ± 0.631

4.147 ± 1.742

5.423 ± 0.634

3.19 ± 0.669

7.018 ± 1.547

6.061 ± 1.053

8.134 ± 1.684

6.061 ± 0.334

2.871 ± 0.195

4.625 ± 0.287
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski