Thermoplasmatales archaeon A-plasma

Taxonomy: cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; unclassified Thermoplasmatales

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2276 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T0M4U8|T0M4U8_9ARCH Major facilitator superfamily MFS_1 OS=Thermoplasmatales archaeon A-plasma OX=667135 GN=AMDU1_APLC00016G0024 PE=4 SV=1
MM1 pKa = 7.24TLKK4 pKa = 10.7LDD6 pKa = 3.42ARR8 pKa = 11.84LLYY11 pKa = 10.51EE12 pKa = 4.37IMSEE16 pKa = 3.9FHH18 pKa = 6.05TLGDD22 pKa = 3.89EE23 pKa = 4.4EE24 pKa = 5.11YY25 pKa = 10.36GGQGTFQEE33 pKa = 5.18AILVGYY39 pKa = 9.98IYY41 pKa = 11.18GLLTEE46 pKa = 4.87NPSSVMTLDD55 pKa = 3.54SGTHH59 pKa = 5.38KK60 pKa = 10.41VFSYY64 pKa = 10.77GGYY67 pKa = 10.16SYY69 pKa = 10.48IIWFDD74 pKa = 3.55EE75 pKa = 4.11IYY77 pKa = 10.53AYY79 pKa = 10.48AEE81 pKa = 4.2DD82 pKa = 5.69DD83 pKa = 3.73EE84 pKa = 5.63DD85 pKa = 3.7EE86 pKa = 5.12KK87 pKa = 11.41EE88 pKa = 4.24PHH90 pKa = 6.51DD91 pKa = 3.73QATEE95 pKa = 3.96TFEE98 pKa = 4.75VKK100 pKa = 10.2IEE102 pKa = 4.21DD103 pKa = 3.66VSEE106 pKa = 4.62DD107 pKa = 3.93DD108 pKa = 5.62DD109 pKa = 6.15RR110 pKa = 11.84EE111 pKa = 4.36GDD113 pKa = 3.59DD114 pKa = 5.44DD115 pKa = 4.4EE116 pKa = 6.6AVLLPVAVEE125 pKa = 4.6GPYY128 pKa = 9.77TADD131 pKa = 4.66DD132 pKa = 3.78IKK134 pKa = 11.51DD135 pKa = 3.73FLANGDD141 pKa = 3.9LL142 pKa = 4.0

Molecular weight: 16.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T0NAW7|T0NAW7_9ARCH ABC transporter ATP-binding protein OS=Thermoplasmatales archaeon A-plasma OX=667135 GN=AMDU1_APLC00044G0033 PE=4 SV=1
MM1 pKa = 7.91RR2 pKa = 11.84GGDD5 pKa = 3.13RR6 pKa = 11.84TAKK9 pKa = 10.22KK10 pKa = 9.93RR11 pKa = 11.84IKK13 pKa = 9.96RR14 pKa = 11.84RR15 pKa = 11.84KK16 pKa = 7.22ATNAAKK22 pKa = 10.07RR23 pKa = 11.84RR24 pKa = 11.84KK25 pKa = 7.87PTRR28 pKa = 11.84KK29 pKa = 9.32PKK31 pKa = 10.36GKK33 pKa = 8.59KK34 pKa = 5.8TRR36 pKa = 11.84KK37 pKa = 7.15RR38 pKa = 11.84TGRR41 pKa = 11.84RR42 pKa = 3.18

Molecular weight: 4.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2276

0

2276

587698

24

2121

258.2

28.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.973 ± 0.055

0.658 ± 0.016

5.227 ± 0.05

6.048 ± 0.064

4.642 ± 0.042

7.586 ± 0.05

1.795 ± 0.02

8.059 ± 0.045

5.293 ± 0.061

9.051 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.154 ± 0.028

4.201 ± 0.052

4.059 ± 0.035

2.522 ± 0.029

5.568 ± 0.058

8.046 ± 0.066

5.205 ± 0.043

7.092 ± 0.039

0.929 ± 0.018

3.889 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski