Armillaria ostoyae (Armillaria root rot fungus)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Physalacriaceae; Armillaria

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22192 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A284QTQ0|A0A284QTQ0_ARMOS Uncharacterized protein OS=Armillaria ostoyae OX=47428 GN=ARMOST_03104 PE=4 SV=1
MM1 pKa = 8.03DD2 pKa = 5.78ALDD5 pKa = 4.36EE6 pKa = 4.7GSDD9 pKa = 3.48VDD11 pKa = 3.77VTLVHH16 pKa = 6.68EE17 pKa = 4.33MLLNSVISYY26 pKa = 9.82LIEE29 pKa = 4.16MDD31 pKa = 3.95TEE33 pKa = 4.56STSPTDD39 pKa = 2.78VDD41 pKa = 5.42LNHH44 pKa = 6.97EE45 pKa = 4.6DD46 pKa = 3.52KK47 pKa = 11.37DD48 pKa = 4.03LVEE51 pKa = 4.17MLDD54 pKa = 3.68YY55 pKa = 11.1LVAKK59 pKa = 10.09AALHH63 pKa = 6.63LDD65 pKa = 5.13PIPEE69 pKa = 4.38DD70 pKa = 4.03DD71 pKa = 4.19KK72 pKa = 11.9LVDD75 pKa = 3.65NEE77 pKa = 4.29VDD79 pKa = 3.45GKK81 pKa = 9.2TDD83 pKa = 2.96SSGDD87 pKa = 3.35IEE89 pKa = 4.58TWCCEE94 pKa = 4.16VEE96 pKa = 4.48SSCDD100 pKa = 3.75DD101 pKa = 3.85EE102 pKa = 6.96LDD104 pKa = 3.83LDD106 pKa = 4.03IVPLLLCSPPYY117 pKa = 10.75GEE119 pKa = 4.7WDD121 pKa = 3.62DD122 pKa = 4.32GEE124 pKa = 4.22PVINIWDD131 pKa = 3.59VSLKK135 pKa = 10.73HH136 pKa = 6.13GLTLIEE142 pKa = 5.34PPQPWDD148 pKa = 3.4EE149 pKa = 4.11RR150 pKa = 11.84DD151 pKa = 3.5EE152 pKa = 4.67EE153 pKa = 4.32EE154 pKa = 5.45LEE156 pKa = 4.41RR157 pKa = 11.84PPPMQLLPFIPRR169 pKa = 11.84EE170 pKa = 4.18SIEE173 pKa = 4.23PEE175 pKa = 3.72AQRR178 pKa = 11.84GLWFYY183 pKa = 11.75SEE185 pKa = 4.92LSNDD189 pKa = 3.6YY190 pKa = 9.94PHH192 pKa = 7.5SFEE195 pKa = 5.0EE196 pKa = 4.25KK197 pKa = 9.36FSFINSYY204 pKa = 9.59GCKK207 pKa = 9.67EE208 pKa = 4.1SCHH211 pKa = 6.12PCSFGDD217 pKa = 3.56TVAQNVQQ224 pKa = 2.85

Molecular weight: 25.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A284SBF7|A0A284SBF7_ARMOS Uncharacterized protein OS=Armillaria ostoyae OX=47428 GN=ARMOST_21918 PE=4 SV=1
MM1 pKa = 7.93RR2 pKa = 11.84ARR4 pKa = 11.84FRR6 pKa = 11.84ASLHH10 pKa = 4.87MIKK13 pKa = 10.22RR14 pKa = 11.84QRR16 pKa = 11.84LLLL19 pKa = 4.14

Molecular weight: 2.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22192

0

22192

9048897

8

4981

407.8

45.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.789 ± 0.013

1.409 ± 0.006

5.851 ± 0.012

5.852 ± 0.015

3.892 ± 0.009

6.008 ± 0.015

2.653 ± 0.008

5.273 ± 0.012

4.611 ± 0.015

9.341 ± 0.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.172 ± 0.006

3.519 ± 0.008

6.358 ± 0.022

3.621 ± 0.009

6.068 ± 0.013

8.657 ± 0.02

6.137 ± 0.011

6.347 ± 0.012

1.557 ± 0.007

2.884 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski