Yersinia phage vB_Yen_X1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 88 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W0H6|A0A5Q2W0H6_9CAUD Uncharacterized protein OS=Yersinia phage vB_Yen_X1 OX=2663327 GN=X1_80 PE=4 SV=1
MM1 pKa = 7.78ANNIIIPISSYY12 pKa = 10.64PDD14 pKa = 2.97QTFSIEE20 pKa = 4.04LDD22 pKa = 4.16GIPLQMRR29 pKa = 11.84VYY31 pKa = 10.37WSTFNDD37 pKa = 3.1KK38 pKa = 9.43MRR40 pKa = 11.84QLVEE44 pKa = 4.21EE45 pKa = 4.31EE46 pKa = 4.5NGPEE50 pKa = 4.73IYY52 pKa = 10.4GAWHH56 pKa = 6.23MDD58 pKa = 2.71IVGSDD63 pKa = 3.06IEE65 pKa = 4.88LYY67 pKa = 11.04GLGIVQGCDD76 pKa = 2.65IIEE79 pKa = 4.75PYY81 pKa = 10.4SIPEE85 pKa = 3.82LGGFFVGNIEE95 pKa = 4.29GKK97 pKa = 10.43ASEE100 pKa = 4.11ITYY103 pKa = 10.62DD104 pKa = 3.58SLGSEE109 pKa = 4.24HH110 pKa = 7.68VLMYY114 pKa = 10.27ILKK117 pKa = 10.44EE118 pKa = 3.93NLQDD122 pKa = 4.28FYY124 pKa = 11.38TAIGYY129 pKa = 9.97RR130 pKa = 11.84NATII134 pKa = 3.89

Molecular weight: 15.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W414|A0A5Q2W414_9CAUD Uncharacterized protein OS=Yersinia phage vB_Yen_X1 OX=2663327 GN=X1_24 PE=4 SV=1
MM1 pKa = 7.13IHH3 pKa = 6.26VSRR6 pKa = 11.84VKK8 pKa = 10.86GGFAAFGKK16 pKa = 10.34FGAVFQTDD24 pKa = 2.95KK25 pKa = 10.99SGKK28 pKa = 9.18VVNTNIPKK36 pKa = 10.58NSDD39 pKa = 2.69KK40 pKa = 10.61YY41 pKa = 9.86RR42 pKa = 11.84EE43 pKa = 3.8MRR45 pKa = 11.84KK46 pKa = 9.28RR47 pKa = 11.84VSAYY51 pKa = 9.17IKK53 pKa = 10.03EE54 pKa = 4.45YY55 pKa = 10.41YY56 pKa = 9.83AA57 pKa = 5.38

Molecular weight: 6.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

88

0

88

15243

34

700

173.2

19.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.496 ± 0.266

1.01 ± 0.112

6.856 ± 0.261

7.636 ± 0.26

3.634 ± 0.164

7.19 ± 0.327

1.876 ± 0.14

6.56 ± 0.24

7.249 ± 0.26

7.439 ± 0.219

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.208 ± 0.145

4.75 ± 0.23

3.359 ± 0.186

3.451 ± 0.189

4.992 ± 0.224

5.268 ± 0.201

5.412 ± 0.217

6.928 ± 0.242

1.483 ± 0.131

3.201 ± 0.164
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski