Simian adenovirus 24

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus; Human mastadenovirus E

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 36 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6QP99|Q6QP99_9ADEN Isoform of Q6QPA1 Pre-hexon-linking protein VIII OS=Simian adenovirus 24 OX=175568 GN=L4 PE=2 SV=1
MM1 pKa = 7.54RR2 pKa = 11.84HH3 pKa = 6.29LRR5 pKa = 11.84DD6 pKa = 3.2LPGNVFLATGNEE18 pKa = 3.79ILEE21 pKa = 4.42LVVDD25 pKa = 4.42AMMGGDD31 pKa = 3.95PPEE34 pKa = 4.7PPTPFEE40 pKa = 4.46APSLYY45 pKa = 10.52DD46 pKa = 4.21LYY48 pKa = 11.22DD49 pKa = 4.17LEE51 pKa = 4.96VDD53 pKa = 4.44VPEE56 pKa = 4.6NDD58 pKa = 3.8PNEE61 pKa = 4.16EE62 pKa = 3.91AVNDD66 pKa = 4.14LFSDD70 pKa = 4.25AALLAAEE77 pKa = 4.49QANTDD82 pKa = 3.78SGSDD86 pKa = 3.51SDD88 pKa = 5.19SSLHH92 pKa = 5.2TPRR95 pKa = 11.84PGRR98 pKa = 11.84GEE100 pKa = 3.95KK101 pKa = 10.14KK102 pKa = 9.74IPEE105 pKa = 4.3LKK107 pKa = 10.87GEE109 pKa = 4.08EE110 pKa = 4.1LDD112 pKa = 3.62LRR114 pKa = 11.84CYY116 pKa = 9.99EE117 pKa = 4.13EE118 pKa = 5.15CLPPSDD124 pKa = 5.59DD125 pKa = 4.51EE126 pKa = 4.45EE127 pKa = 5.74DD128 pKa = 3.72EE129 pKa = 4.2EE130 pKa = 5.51AIRR133 pKa = 11.84AASNQGVKK141 pKa = 10.32AAGEE145 pKa = 4.49SFSLDD150 pKa = 3.7CPTLPGHH157 pKa = 5.87GCKK160 pKa = 9.99SCEE163 pKa = 3.94FHH165 pKa = 7.8RR166 pKa = 11.84MNTGDD171 pKa = 4.13KK172 pKa = 11.02NVMCALCYY180 pKa = 9.23MRR182 pKa = 11.84AYY184 pKa = 8.98NHH186 pKa = 6.34CVYY189 pKa = 11.0SPVSDD194 pKa = 3.54VDD196 pKa = 3.5EE197 pKa = 4.95TPTSEE202 pKa = 5.04CISSPPEE209 pKa = 3.91IGEE212 pKa = 4.39EE213 pKa = 3.96PPEE216 pKa = 4.78DD217 pKa = 4.09IIHH220 pKa = 6.56RR221 pKa = 11.84PVAVRR226 pKa = 11.84VTGRR230 pKa = 11.84RR231 pKa = 11.84AAVEE235 pKa = 4.11SLDD238 pKa = 5.42DD239 pKa = 4.14LLQGGDD245 pKa = 4.15EE246 pKa = 4.44PLDD249 pKa = 3.5LCTRR253 pKa = 11.84KK254 pKa = 9.93RR255 pKa = 11.84PRR257 pKa = 11.84HH258 pKa = 4.74

Molecular weight: 28.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6QPA7|Q6QPA7_9ADEN V OS=Simian adenovirus 24 OX=175568 PE=3 SV=1
MM1 pKa = 7.77ALTCRR6 pKa = 11.84LRR8 pKa = 11.84VPITGYY14 pKa = 10.11RR15 pKa = 11.84GRR17 pKa = 11.84KK18 pKa = 6.61PRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84LTGNGLRR30 pKa = 11.84RR31 pKa = 11.84HH32 pKa = 4.44HH33 pKa = 6.27HH34 pKa = 5.26RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84AISKK42 pKa = 9.94RR43 pKa = 11.84LGGGFLPALIPIIAAAIGAIPGIASVAVQASQRR76 pKa = 11.84HH77 pKa = 4.3

Molecular weight: 8.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

32

4

36

11588

77

1190

321.9

36.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.034 ± 0.347

2.028 ± 0.306

4.953 ± 0.314

6.386 ± 0.523

3.573 ± 0.213

6.343 ± 0.294

2.416 ± 0.229

3.806 ± 0.276

3.573 ± 0.381

9.631 ± 0.336

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.58 ± 0.185

4.177 ± 0.34

6.792 ± 0.303

4.332 ± 0.293

7.396 ± 0.6

6.938 ± 0.43

6.162 ± 0.46

6.369 ± 0.268

1.277 ± 0.093

3.236 ± 0.32
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski