Amino acid dipepetide frequency for Gremmeniella abietina type B RNA virus XL1 (GaRV-XL1)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.084AlaAla: 4.084 ± 0.0
0.875AlaCys: 0.875 ± 0.0
3.501AlaAsp: 3.501 ± 0.0
3.209AlaGlu: 3.209 ± 0.0
1.75AlaPhe: 1.75 ± 0.0
1.75AlaGly: 1.75 ± 0.0
1.75AlaHis: 1.75 ± 0.0
5.543AlaIle: 5.543 ± 0.0
3.209AlaLys: 3.209 ± 0.0
4.084AlaLeu: 4.084 ± 0.0
2.042AlaMet: 2.042 ± 0.0
4.084AlaAsn: 4.084 ± 0.0
1.75AlaPro: 1.75 ± 0.0
2.042AlaGln: 2.042 ± 0.0
2.334AlaArg: 2.334 ± 0.0
3.209AlaSer: 3.209 ± 0.0
7.876AlaThr: 7.876 ± 0.0
2.917AlaVal: 2.917 ± 0.0
0.0AlaTrp: 0.0 ± 0.0
2.917AlaTyr: 2.917 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.292CysAla: 0.292 ± 0.0
0.875CysCys: 0.875 ± 0.0
1.167CysAsp: 1.167 ± 0.0
0.292CysGlu: 0.292 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.167CysGly: 1.167 ± 0.0
0.292CysHis: 0.292 ± 0.0
1.167CysIle: 1.167 ± 0.0
0.875CysLys: 0.875 ± 0.0
0.583CysLeu: 0.583 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.459CysAsn: 1.459 ± 0.0
1.75CysPro: 1.75 ± 0.0
0.875CysGln: 0.875 ± 0.0
0.583CysArg: 0.583 ± 0.0
1.459CysSer: 1.459 ± 0.0
2.042CysThr: 2.042 ± 0.0
1.459CysVal: 1.459 ± 0.0
0.292CysTrp: 0.292 ± 0.0
0.292CysTyr: 0.292 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.209AspAla: 3.209 ± 0.0
0.875AspCys: 0.875 ± 0.0
4.084AspAsp: 4.084 ± 0.0
2.917AspGlu: 2.917 ± 0.0
2.625AspPhe: 2.625 ± 0.0
3.209AspGly: 3.209 ± 0.0
1.459AspHis: 1.459 ± 0.0
6.709AspIle: 6.709 ± 0.0
3.501AspLys: 3.501 ± 0.0
5.834AspLeu: 5.834 ± 0.0
2.334AspMet: 2.334 ± 0.0
2.042AspAsn: 2.042 ± 0.0
2.042AspPro: 2.042 ± 0.0
0.875AspGln: 0.875 ± 0.0
2.334AspArg: 2.334 ± 0.0
4.376AspSer: 4.376 ± 0.0
2.917AspThr: 2.917 ± 0.0
4.376AspVal: 4.376 ± 0.0
2.042AspTrp: 2.042 ± 0.0
2.334AspTyr: 2.334 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
2.625GluAla: 2.625 ± 0.0
0.583GluCys: 0.583 ± 0.0
2.334GluAsp: 2.334 ± 0.0
2.917GluGlu: 2.917 ± 0.0
2.625GluPhe: 2.625 ± 0.0
0.875GluGly: 0.875 ± 0.0
2.042GluHis: 2.042 ± 0.0
4.376GluIle: 4.376 ± 0.0
2.917GluLys: 2.917 ± 0.0
3.501GluLeu: 3.501 ± 0.0
1.459GluMet: 1.459 ± 0.0
2.625GluAsn: 2.625 ± 0.0
2.334GluPro: 2.334 ± 0.0
2.334GluGln: 2.334 ± 0.0
1.75GluArg: 1.75 ± 0.0
3.792GluSer: 3.792 ± 0.0
2.334GluThr: 2.334 ± 0.0
2.917GluVal: 2.917 ± 0.0
1.459GluTrp: 1.459 ± 0.0
1.75GluTyr: 1.75 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.917PheAla: 2.917 ± 0.0
0.292PheCys: 0.292 ± 0.0
2.625PheAsp: 2.625 ± 0.0
1.75PheGlu: 1.75 ± 0.0
0.583PhePhe: 0.583 ± 0.0
2.042PheGly: 2.042 ± 0.0
0.0PheHis: 0.0 ± 0.0
3.501PheIle: 3.501 ± 0.0
1.75PheLys: 1.75 ± 0.0
1.75PheLeu: 1.75 ± 0.0
1.167PheMet: 1.167 ± 0.0
2.042PheAsn: 2.042 ± 0.0
0.292PhePro: 0.292 ± 0.0
0.292PheGln: 0.292 ± 0.0
0.292PheArg: 0.292 ± 0.0
1.459PheSer: 1.459 ± 0.0
2.334PheThr: 2.334 ± 0.0
3.792PheVal: 3.792 ± 0.0
0.292PheTrp: 0.292 ± 0.0
1.75PheTyr: 1.75 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.625GlyAla: 2.625 ± 0.0
0.583GlyCys: 0.583 ± 0.0
2.334GlyAsp: 2.334 ± 0.0
2.334GlyGlu: 2.334 ± 0.0
1.75GlyPhe: 1.75 ± 0.0
2.917GlyGly: 2.917 ± 0.0
1.167GlyHis: 1.167 ± 0.0
2.917GlyIle: 2.917 ± 0.0
4.667GlyLys: 4.667 ± 0.0
4.959GlyLeu: 4.959 ± 0.0
1.75GlyMet: 1.75 ± 0.0
5.251GlyAsn: 5.251 ± 0.0
1.459GlyPro: 1.459 ± 0.0
2.042GlyGln: 2.042 ± 0.0
4.667GlyArg: 4.667 ± 0.0
4.667GlySer: 4.667 ± 0.0
2.917GlyThr: 2.917 ± 0.0
3.501GlyVal: 3.501 ± 0.0
0.0GlyTrp: 0.0 ± 0.0
2.917GlyTyr: 2.917 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
3.501HisAla: 3.501 ± 0.0
0.583HisCys: 0.583 ± 0.0
1.75HisAsp: 1.75 ± 0.0
0.583HisGlu: 0.583 ± 0.0
1.167HisPhe: 1.167 ± 0.0
2.917HisGly: 2.917 ± 0.0
0.292HisHis: 0.292 ± 0.0
3.209HisIle: 3.209 ± 0.0
1.75HisLys: 1.75 ± 0.0
2.625HisLeu: 2.625 ± 0.0
0.875HisMet: 0.875 ± 0.0
2.334HisAsn: 2.334 ± 0.0
0.875HisPro: 0.875 ± 0.0
0.292HisGln: 0.292 ± 0.0
0.0HisArg: 0.0 ± 0.0
2.042HisSer: 2.042 ± 0.0
1.459HisThr: 1.459 ± 0.0
2.042HisVal: 2.042 ± 0.0
0.875HisTrp: 0.875 ± 0.0
0.583HisTyr: 0.583 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
2.917IleAla: 2.917 ± 0.0
2.042IleCys: 2.042 ± 0.0
8.168IleAsp: 8.168 ± 0.0
3.501IleGlu: 3.501 ± 0.0
2.625IlePhe: 2.625 ± 0.0
5.834IleGly: 5.834 ± 0.0
1.167IleHis: 1.167 ± 0.0
5.543IleIle: 5.543 ± 0.0
5.251IleLys: 5.251 ± 0.0
5.834IleLeu: 5.834 ± 0.0
1.167IleMet: 1.167 ± 0.0
5.543IleAsn: 5.543 ± 0.0
4.959IlePro: 4.959 ± 0.0
2.625IleGln: 2.625 ± 0.0
2.334IleArg: 2.334 ± 0.0
4.667IleSer: 4.667 ± 0.0
5.251IleThr: 5.251 ± 0.0
5.543IleVal: 5.543 ± 0.0
0.0IleTrp: 0.0 ± 0.0
1.167IleTyr: 1.167 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.959LysAla: 4.959 ± 0.0
1.167LysCys: 1.167 ± 0.0
2.042LysAsp: 2.042 ± 0.0
2.042LysGlu: 2.042 ± 0.0
2.334LysPhe: 2.334 ± 0.0
3.501LysGly: 3.501 ± 0.0
2.042LysHis: 2.042 ± 0.0
2.917LysIle: 2.917 ± 0.0
2.334LysLys: 2.334 ± 0.0
8.46LysLeu: 8.46 ± 0.0
1.167LysMet: 1.167 ± 0.0
4.959LysAsn: 4.959 ± 0.0
3.501LysPro: 3.501 ± 0.0
3.209LysGln: 3.209 ± 0.0
2.917LysArg: 2.917 ± 0.0
6.126LysSer: 6.126 ± 0.0
5.543LysThr: 5.543 ± 0.0
5.543LysVal: 5.543 ± 0.0
0.583LysTrp: 0.583 ± 0.0
2.042LysTyr: 2.042 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.959LeuAla: 4.959 ± 0.0
0.292LeuCys: 0.292 ± 0.0
4.667LeuAsp: 4.667 ± 0.0
3.501LeuGlu: 3.501 ± 0.0
3.501LeuPhe: 3.501 ± 0.0
5.543LeuGly: 5.543 ± 0.0
2.625LeuHis: 2.625 ± 0.0
8.751LeuIle: 8.751 ± 0.0
8.168LeuLys: 8.168 ± 0.0
9.335LeuLeu: 9.335 ± 0.0
2.625LeuMet: 2.625 ± 0.0
6.709LeuAsn: 6.709 ± 0.0
3.792LeuPro: 3.792 ± 0.0
2.625LeuGln: 2.625 ± 0.0
3.501LeuArg: 3.501 ± 0.0
7.001LeuSer: 7.001 ± 0.0
4.959LeuThr: 4.959 ± 0.0
5.251LeuVal: 5.251 ± 0.0
0.875LeuTrp: 0.875 ± 0.0
3.501LeuTyr: 3.501 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.459MetAla: 1.459 ± 0.0
0.292MetCys: 0.292 ± 0.0
1.167MetAsp: 1.167 ± 0.0
0.583MetGlu: 0.583 ± 0.0
0.583MetPhe: 0.583 ± 0.0
0.875MetGly: 0.875 ± 0.0
1.167MetHis: 1.167 ± 0.0
1.75MetIle: 1.75 ± 0.0
3.209MetLys: 3.209 ± 0.0
2.917MetLeu: 2.917 ± 0.0
0.583MetMet: 0.583 ± 0.0
1.459MetAsn: 1.459 ± 0.0
1.459MetPro: 1.459 ± 0.0
1.75MetGln: 1.75 ± 0.0
1.167MetArg: 1.167 ± 0.0
1.75MetSer: 1.75 ± 0.0
1.75MetThr: 1.75 ± 0.0
0.583MetVal: 0.583 ± 0.0
0.292MetTrp: 0.292 ± 0.0
0.583MetTyr: 0.583 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.667AsnAla: 4.667 ± 0.0
1.75AsnCys: 1.75 ± 0.0
3.501AsnAsp: 3.501 ± 0.0
4.959AsnGlu: 4.959 ± 0.0
2.334AsnPhe: 2.334 ± 0.0
2.625AsnGly: 2.625 ± 0.0
0.583AsnHis: 0.583 ± 0.0
6.126AsnIle: 6.126 ± 0.0
5.834AsnLys: 5.834 ± 0.0
5.251AsnLeu: 5.251 ± 0.0
2.334AsnMet: 2.334 ± 0.0
5.834AsnAsn: 5.834 ± 0.0
2.334AsnPro: 2.334 ± 0.0
2.042AsnGln: 2.042 ± 0.0
2.625AsnArg: 2.625 ± 0.0
4.376AsnSer: 4.376 ± 0.0
5.834AsnThr: 5.834 ± 0.0
4.667AsnVal: 4.667 ± 0.0
0.292AsnTrp: 0.292 ± 0.0
1.75AsnTyr: 1.75 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.459ProAla: 1.459 ± 0.0
0.292ProCys: 0.292 ± 0.0
2.334ProAsp: 2.334 ± 0.0
1.459ProGlu: 1.459 ± 0.0
0.583ProPhe: 0.583 ± 0.0
2.334ProGly: 2.334 ± 0.0
0.875ProHis: 0.875 ± 0.0
4.084ProIle: 4.084 ± 0.0
2.917ProLys: 2.917 ± 0.0
3.501ProLeu: 3.501 ± 0.0
0.292ProMet: 0.292 ± 0.0
3.501ProAsn: 3.501 ± 0.0
0.875ProPro: 0.875 ± 0.0
1.459ProGln: 1.459 ± 0.0
0.583ProArg: 0.583 ± 0.0
5.251ProSer: 5.251 ± 0.0
4.084ProThr: 4.084 ± 0.0
3.209ProVal: 3.209 ± 0.0
0.0ProTrp: 0.0 ± 0.0
0.292ProTyr: 0.292 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.334GlnAla: 2.334 ± 0.0
0.292GlnCys: 0.292 ± 0.0
2.917GlnAsp: 2.917 ± 0.0
2.917GlnGlu: 2.917 ± 0.0
0.292GlnPhe: 0.292 ± 0.0
0.583GlnGly: 0.583 ± 0.0
1.459GlnHis: 1.459 ± 0.0
1.75GlnIle: 1.75 ± 0.0
1.459GlnLys: 1.459 ± 0.0
3.501GlnLeu: 3.501 ± 0.0
0.292GlnMet: 0.292 ± 0.0
1.167GlnAsn: 1.167 ± 0.0
0.583GlnPro: 0.583 ± 0.0
0.875GlnGln: 0.875 ± 0.0
1.167GlnArg: 1.167 ± 0.0
1.167GlnSer: 1.167 ± 0.0
2.625GlnThr: 2.625 ± 0.0
2.042GlnVal: 2.042 ± 0.0
0.292GlnTrp: 0.292 ± 0.0
0.875GlnTyr: 0.875 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.75ArgAla: 1.75 ± 0.0
1.167ArgCys: 1.167 ± 0.0
2.917ArgAsp: 2.917 ± 0.0
2.334ArgGlu: 2.334 ± 0.0
1.167ArgPhe: 1.167 ± 0.0
0.875ArgGly: 0.875 ± 0.0
2.917ArgHis: 2.917 ± 0.0
1.459ArgIle: 1.459 ± 0.0
1.167ArgLys: 1.167 ± 0.0
8.168ArgLeu: 8.168 ± 0.0
0.292ArgMet: 0.292 ± 0.0
2.917ArgAsn: 2.917 ± 0.0
2.625ArgPro: 2.625 ± 0.0
1.75ArgGln: 1.75 ± 0.0
0.875ArgArg: 0.875 ± 0.0
2.334ArgSer: 2.334 ± 0.0
2.625ArgThr: 2.625 ± 0.0
2.917ArgVal: 2.917 ± 0.0
0.583ArgTrp: 0.583 ± 0.0
0.875ArgTyr: 0.875 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
2.334SerAla: 2.334 ± 0.0
2.042SerCys: 2.042 ± 0.0
3.792SerAsp: 3.792 ± 0.0
3.501SerGlu: 3.501 ± 0.0
2.625SerPhe: 2.625 ± 0.0
6.709SerGly: 6.709 ± 0.0
2.917SerHis: 2.917 ± 0.0
5.834SerIle: 5.834 ± 0.0
4.667SerLys: 4.667 ± 0.0
6.418SerLeu: 6.418 ± 0.0
2.917SerMet: 2.917 ± 0.0
4.084SerAsn: 4.084 ± 0.0
1.459SerPro: 1.459 ± 0.0
0.875SerGln: 0.875 ± 0.0
6.126SerArg: 6.126 ± 0.0
6.709SerSer: 6.709 ± 0.0
6.418SerThr: 6.418 ± 0.0
2.917SerVal: 2.917 ± 0.0
0.875SerTrp: 0.875 ± 0.0
1.459SerTyr: 1.459 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.959ThrAla: 4.959 ± 0.0
1.459ThrCys: 1.459 ± 0.0
3.792ThrAsp: 3.792 ± 0.0
2.625ThrGlu: 2.625 ± 0.0
2.917ThrPhe: 2.917 ± 0.0
3.501ThrGly: 3.501 ± 0.0
2.917ThrHis: 2.917 ± 0.0
3.792ThrIle: 3.792 ± 0.0
4.959ThrLys: 4.959 ± 0.0
8.168ThrLeu: 8.168 ± 0.0
1.75ThrMet: 1.75 ± 0.0
4.084ThrAsn: 4.084 ± 0.0
4.376ThrPro: 4.376 ± 0.0
1.167ThrGln: 1.167 ± 0.0
3.792ThrArg: 3.792 ± 0.0
5.834ThrSer: 5.834 ± 0.0
4.959ThrThr: 4.959 ± 0.0
4.959ThrVal: 4.959 ± 0.0
1.167ThrTrp: 1.167 ± 0.0
2.917ThrTyr: 2.917 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.084ValAla: 4.084 ± 0.0
0.875ValCys: 0.875 ± 0.0
4.376ValAsp: 4.376 ± 0.0
4.084ValGlu: 4.084 ± 0.0
0.875ValPhe: 0.875 ± 0.0
4.376ValGly: 4.376 ± 0.0
2.625ValHis: 2.625 ± 0.0
4.959ValIle: 4.959 ± 0.0
5.251ValLys: 5.251 ± 0.0
4.667ValLeu: 4.667 ± 0.0
1.459ValMet: 1.459 ± 0.0
6.709ValAsn: 6.709 ± 0.0
2.334ValPro: 2.334 ± 0.0
0.875ValGln: 0.875 ± 0.0
2.334ValArg: 2.334 ± 0.0
4.084ValSer: 4.084 ± 0.0
5.543ValThr: 5.543 ± 0.0
5.543ValVal: 5.543 ± 0.0
0.875ValTrp: 0.875 ± 0.0
2.334ValTyr: 2.334 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.459TrpAla: 1.459 ± 0.0
0.292TrpCys: 0.292 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.292TrpGlu: 0.292 ± 0.0
0.292TrpPhe: 0.292 ± 0.0
0.875TrpGly: 0.875 ± 0.0
0.292TrpHis: 0.292 ± 0.0
0.583TrpIle: 0.583 ± 0.0
0.292TrpLys: 0.292 ± 0.0
1.459TrpLeu: 1.459 ± 0.0
0.292TrpMet: 0.292 ± 0.0
1.167TrpAsn: 1.167 ± 0.0
0.292TrpPro: 0.292 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.292TrpArg: 0.292 ± 0.0
1.167TrpSer: 1.167 ± 0.0
0.583TrpThr: 0.583 ± 0.0
1.459TrpVal: 1.459 ± 0.0
0.583TrpTrp: 0.583 ± 0.0
0.292TrpTyr: 0.292 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.334TyrAla: 2.334 ± 0.0
0.292TyrCys: 0.292 ± 0.0
2.625TyrAsp: 2.625 ± 0.0
1.75TyrGlu: 1.75 ± 0.0
0.292TyrPhe: 0.292 ± 0.0
2.917TyrGly: 2.917 ± 0.0
1.167TyrHis: 1.167 ± 0.0
1.167TyrIle: 1.167 ± 0.0
3.209TyrLys: 3.209 ± 0.0
1.459TyrLeu: 1.459 ± 0.0
0.292TyrMet: 0.292 ± 0.0
1.75TyrAsn: 1.75 ± 0.0
0.292TyrPro: 0.292 ± 0.0
0.583TyrGln: 0.583 ± 0.0
2.042TyrArg: 2.042 ± 0.0
3.209TyrSer: 3.209 ± 0.0
2.042TyrThr: 2.042 ± 0.0
2.625TyrVal: 2.625 ± 0.0
0.583TyrTrp: 0.583 ± 0.0
0.292TyrTyr: 0.292 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3429 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski