White spot syndrome virus

Taxonomy: Viruses; Naldaviricetes; Nimaviridae; Whispovirus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 164 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2E5Q9|A0A0S2E5Q9_9VIRU Envelope protein OS=White spot syndrome virus OX=342409 PE=4 SV=1
MM1 pKa = 7.84AIKK4 pKa = 10.14DD5 pKa = 3.77YY6 pKa = 10.22EE7 pKa = 4.32IPDD10 pKa = 3.82SYY12 pKa = 11.75SKK14 pKa = 11.27VEE16 pKa = 4.04AEE18 pKa = 4.08HH19 pKa = 5.64TVEE22 pKa = 3.91GRR24 pKa = 11.84KK25 pKa = 6.87MTFNIKK31 pKa = 8.82WRR33 pKa = 11.84GDD35 pKa = 3.65TINNLITIIPSVTGYY50 pKa = 10.01LASISEE56 pKa = 4.52DD57 pKa = 3.32ADD59 pKa = 3.55VQAPLLLNCNNCFIEE74 pKa = 6.15ADD76 pKa = 3.64MSSLYY81 pKa = 9.71MDD83 pKa = 3.94EE84 pKa = 5.07KK85 pKa = 10.22KK86 pKa = 9.25TEE88 pKa = 3.87ASFTLNLPEE97 pKa = 5.7IEE99 pKa = 4.4GADD102 pKa = 3.32ANAVYY107 pKa = 8.87EE108 pKa = 4.0ICIVVVV114 pKa = 3.69

Molecular weight: 12.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q910R0|Q910R0_9VIRU Ribonucleoside-diphosphate reductase OS=White spot syndrome virus OX=342409 GN=RR2 PE=3 SV=1
MM1 pKa = 7.18VARR4 pKa = 11.84SSKK7 pKa = 8.23TKK9 pKa = 10.2SRR11 pKa = 11.84RR12 pKa = 11.84GSKK15 pKa = 9.86KK16 pKa = 9.73RR17 pKa = 11.84STTAGRR23 pKa = 11.84ISKK26 pKa = 9.98RR27 pKa = 11.84RR28 pKa = 11.84SPSMKK33 pKa = 9.48KK34 pKa = 9.83RR35 pKa = 11.84AGKK38 pKa = 10.17KK39 pKa = 8.75SSTVRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84SSKK49 pKa = 10.18SGKK52 pKa = 9.73KK53 pKa = 9.68SGARR57 pKa = 11.84KK58 pKa = 9.36SRR60 pKa = 11.84RR61 pKa = 3.37

Molecular weight: 6.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

164

0

164

89590

61

6077

546.3

61.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.109 ± 0.202

1.786 ± 0.095

5.962 ± 0.125

7.274 ± 0.204

4.272 ± 0.093

5.633 ± 0.297

1.818 ± 0.073

5.835 ± 0.113

7.255 ± 0.146

7.779 ± 0.126

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.647 ± 0.07

6.152 ± 0.144

4.379 ± 0.184

3.023 ± 0.187

5.128 ± 0.132

8.944 ± 0.264

6.023 ± 0.121

6.308 ± 0.107

0.775 ± 0.047

2.899 ± 0.081
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski