Luteococcus japonicus LSP_Lj1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Luteococcus; Luteococcus japonicus

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3244 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1R4J012|A0A1R4J012_9ACTN SSS sodium solute transporter superfamily OS=Luteococcus japonicus LSP_Lj1 OX=1255658 GN=FM114_04595 PE=3 SV=1
MM1 pKa = 7.14VCHH4 pKa = 7.06GDD6 pKa = 3.13ACNPNFLIGDD16 pKa = 4.13DD17 pKa = 4.43GEE19 pKa = 4.42VSGFVDD25 pKa = 4.3LGRR28 pKa = 11.84TGVADD33 pKa = 4.06RR34 pKa = 11.84HH35 pKa = 6.45ADD37 pKa = 3.57LAPAVLSLGWNFGDD51 pKa = 3.36GWTDD55 pKa = 3.25TFLTAYY61 pKa = 9.85CADD64 pKa = 3.8GLTVDD69 pKa = 4.41RR70 pKa = 11.84DD71 pKa = 3.64LLEE74 pKa = 4.3LYY76 pKa = 9.94IRR78 pKa = 11.84LWNAEE83 pKa = 3.78

Molecular weight: 9.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1R4J3F5|A0A1R4J3F5_9ACTN Alkyl hydroperoxide reductase protein F OS=Luteococcus japonicus LSP_Lj1 OX=1255658 GN=FM114_05330 PE=3 SV=1
MM1 pKa = 7.1HH2 pKa = 7.01TRR4 pKa = 11.84HH5 pKa = 6.38HH6 pKa = 6.35GASFTRR12 pKa = 11.84RR13 pKa = 11.84QHH15 pKa = 7.23SIGKK19 pKa = 8.42PNPLVRR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84VGPVTLGWRR36 pKa = 11.84AA37 pKa = 2.98

Molecular weight: 4.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3244

0

3244

992894

37

2336

306.1

33.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.24 ± 0.051

0.889 ± 0.015

5.91 ± 0.037

5.745 ± 0.045

2.87 ± 0.028

8.922 ± 0.037

2.377 ± 0.022

3.941 ± 0.03

2.699 ± 0.044

10.292 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.393 ± 0.018

2.183 ± 0.025

5.355 ± 0.033

3.513 ± 0.026

7.106 ± 0.044

5.443 ± 0.032

6.011 ± 0.036

8.696 ± 0.039

1.604 ± 0.023

1.809 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski