Caulobacter sp. B11

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter; unclassified Caulobacter

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1996 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2G4JRR1|A0A2G4JRR1_9CAUL Methyltransferase OS=Caulobacter sp. B11 OX=2048899 GN=CSW58_07895 PE=3 SV=1
MM1 pKa = 7.99PLTVHH6 pKa = 6.26QFPCLSDD13 pKa = 3.3NYY15 pKa = 10.59GFLVRR20 pKa = 11.84DD21 pKa = 3.74DD22 pKa = 3.95ATGQVATIDD31 pKa = 3.98TPDD34 pKa = 3.03ATT36 pKa = 4.37

Molecular weight: 3.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2G4JSL0|A0A2G4JSL0_9CAUL Uncharacterized protein OS=Caulobacter sp. B11 OX=2048899 GN=CSW58_04285 PE=4 SV=1
FF1 pKa = 6.94NVAATLDD8 pKa = 3.85PTLITATLIKK18 pKa = 10.35PGMNCNVEE26 pKa = 4.17LAPTTLSGAVVAPLSAAISRR46 pKa = 11.84TVSPTTLTATAQAIAGAVVAVTHH69 pKa = 6.11GAVTAAGRR77 pKa = 11.84WRR79 pKa = 11.84HH80 pKa = 5.87PWPQTLAKK88 pKa = 10.5ALGATTGASSAGVAVGGAVNATLAVTGSSASAGVGIVAASAVTLSATGIGAAVGVGLSASAGLVLGPTLLVATLGAIVGAVVARR172 pKa = 11.84TLGATTASGAMVAPIAANATRR193 pKa = 11.84TLGSVTGSSTASINLAAAAGITLAATSATGVVQVALAMAASPVLGATGIAATVAAALSAGAAPVLGATVVAASVAVSLASIVNRR277 pKa = 11.84ALGATVGVGTMSAPISASVLKK298 pKa = 9.69TLGPSLVSSTAGVNVAAAVGVTLAATSVAASVQIALAATAAPTLGATVVTGAVGVAIAAAVSRR361 pKa = 11.84ALGATSMSSSARR373 pKa = 11.84AAIAATSTRR382 pKa = 11.84TLGATSGAATASAALAAMVATVQGATSAAASAGVALAAAAGIVLGGIGRR431 pKa = 11.84TITAGAAIAAASAITLGGIGRR452 pKa = 11.84TITAGAAIAAAVSRR466 pKa = 11.84TLGVTAQAATASVGIAAAVSKK487 pKa = 10.99ALGATTGAATASIALAASLAKK508 pKa = 9.83TLGATSIAFTVRR520 pKa = 11.84AMRR523 pKa = 11.84RR524 pKa = 11.84RR525 pKa = 11.84LVMLVRR531 pKa = 11.84SLRR534 pKa = 11.84PP535 pKa = 3.17

Molecular weight: 48.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1996

0

1996

526181

27

1396

263.6

28.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.731 ± 0.1

0.784 ± 0.016

5.949 ± 0.055

5.223 ± 0.05

3.563 ± 0.037

9.054 ± 0.151

1.806 ± 0.028

4.51 ± 0.039

3.19 ± 0.051

10.232 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.3 ± 0.027

2.301 ± 0.038

5.447 ± 0.049

3.163 ± 0.031

7.27 ± 0.055

5.158 ± 0.04

5.184 ± 0.044

7.581 ± 0.052

1.429 ± 0.027

2.124 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski