Amphibola crenata associated bacilladnavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Baphyvirales; Bacilladnaviridae; Protobacilladnavirus; Snail associated protobacilladnavirus 1

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1P8YT79|A0A1P8YT79_9VIRU p2 OS=Amphibola crenata associated bacilladnavirus 1 OX=1941435 PE=4 SV=1
MM1 pKa = 7.71AIINTHH7 pKa = 5.69MPFSDD12 pKa = 3.54NGEE15 pKa = 4.4LIQVDD20 pKa = 3.83MQKK23 pKa = 11.1ALSCLMFFNTLGIYY37 pKa = 10.5NDD39 pKa = 3.09ATYY42 pKa = 11.09YY43 pKa = 10.68GIKK46 pKa = 10.12LWMDD50 pKa = 3.44AYY52 pKa = 8.78MTIGNAPMPSGVLFKK67 pKa = 11.06SPLGGYY73 pKa = 9.69VGFTQLMAEE82 pKa = 5.26LEE84 pKa = 4.41QEE86 pKa = 3.9WAARR90 pKa = 11.84EE91 pKa = 4.12AFHH94 pKa = 6.46LTIDD98 pKa = 3.9EE99 pKa = 4.66EE100 pKa = 4.38EE101 pKa = 4.36VDD103 pKa = 4.27DD104 pKa = 6.29DD105 pKa = 4.45EE106 pKa = 4.92STVTGPVTQPEE117 pKa = 4.49YY118 pKa = 10.97EE119 pKa = 4.5PYY121 pKa = 11.09ALDD124 pKa = 5.37DD125 pKa = 5.19DD126 pKa = 5.31DD127 pKa = 7.36SIDD130 pKa = 3.46AMLNIPVNIDD140 pKa = 3.23FNLGFFDD147 pKa = 5.25EE148 pKa = 4.52MDD150 pKa = 3.77EE151 pKa = 4.32EE152 pKa = 4.75DD153 pKa = 3.61VV154 pKa = 3.85

Molecular weight: 17.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1P8YT82|A0A1P8YT82_9VIRU p1 OS=Amphibola crenata associated bacilladnavirus 1 OX=1941435 PE=4 SV=1
MM1 pKa = 7.61PKK3 pKa = 9.88KK4 pKa = 9.88SSRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84TTATTKK16 pKa = 10.45KK17 pKa = 10.09KK18 pKa = 10.62SSSKK22 pKa = 10.14KK23 pKa = 9.03AAKK26 pKa = 9.89KK27 pKa = 10.67GPTTKK32 pKa = 10.52KK33 pKa = 9.64VVKK36 pKa = 10.13KK37 pKa = 11.03VMGASAIALKK47 pKa = 10.43PLVSPFDD54 pKa = 4.04RR55 pKa = 11.84SNMQPKK61 pKa = 10.01IPDD64 pKa = 3.59GKK66 pKa = 10.06VGEE69 pKa = 4.41SVGLKK74 pKa = 8.92FTMTKK79 pKa = 10.01EE80 pKa = 4.12YY81 pKa = 11.02SNKK84 pKa = 9.18TLTTMHH90 pKa = 6.8AMLFPGQSGGLFVSGCQNVNGINRR114 pKa = 11.84EE115 pKa = 3.95VQAYY119 pKa = 9.63ANAGGFSYY127 pKa = 10.14TYY129 pKa = 11.44DD130 pKa = 3.59NTTKK134 pKa = 10.15MALLTANEE142 pKa = 5.22KK143 pKa = 8.12YY144 pKa = 10.35HH145 pKa = 5.35SWRR148 pKa = 11.84IVSQAAKK155 pKa = 10.61FEE157 pKa = 4.38LLNPAEE163 pKa = 4.99EE164 pKa = 4.94DD165 pKa = 3.82DD166 pKa = 4.36GWWEE170 pKa = 3.92AVRR173 pKa = 11.84ITDD176 pKa = 3.57MLSLFDD182 pKa = 3.65YY183 pKa = 10.72HH184 pKa = 8.42VEE186 pKa = 3.82QHH188 pKa = 5.71SNKK191 pKa = 9.19TGRR194 pKa = 11.84LQGVFVPFLGLLNLEE209 pKa = 4.55DD210 pKa = 3.75RR211 pKa = 11.84ALTAEE216 pKa = 4.02RR217 pKa = 11.84TYY219 pKa = 11.35EE220 pKa = 3.95SGRR223 pKa = 11.84LKK225 pKa = 10.54DD226 pKa = 2.96IHH228 pKa = 7.59KK229 pKa = 10.52RR230 pKa = 11.84EE231 pKa = 3.73FHH233 pKa = 5.66LRR235 pKa = 11.84QVKK238 pKa = 10.85DD239 pKa = 3.55EE240 pKa = 4.14VDD242 pKa = 4.08FTQLCSPIALEE253 pKa = 4.67GVQEE257 pKa = 4.36TGAGTSGSPFVLANGAGANAGEE279 pKa = 4.35SFGMQNYY286 pKa = 9.46NAMRR290 pKa = 11.84NYY292 pKa = 9.84IDD294 pKa = 4.92FGYY297 pKa = 10.76DD298 pKa = 3.22CIYY301 pKa = 10.8FRR303 pKa = 11.84FHH305 pKa = 6.77CRR307 pKa = 11.84DD308 pKa = 3.22PASATRR314 pKa = 11.84LLTHH318 pKa = 6.1VVSNQEE324 pKa = 3.41IQYY327 pKa = 9.84SSEE330 pKa = 3.95SGEE333 pKa = 4.83SRR335 pKa = 11.84FQTANTRR342 pKa = 11.84HH343 pKa = 5.51AQVDD347 pKa = 3.81TVMANRR353 pKa = 11.84SNGGATTSVPSTSRR367 pKa = 11.84HH368 pKa = 4.66NPHH371 pKa = 6.91RR372 pKa = 4.38

Molecular weight: 41.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1260

154

513

315.0

35.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.952 ± 0.985

1.111 ± 0.344

7.381 ± 1.687

6.905 ± 0.784

3.81 ± 0.64

6.111 ± 0.659

3.254 ± 0.841

4.524 ± 0.68

7.46 ± 1.393

5.714 ± 0.754

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.095 ± 0.614

4.841 ± 0.661

5.397 ± 0.629

3.81 ± 0.131

5.397 ± 0.803

6.587 ± 0.797

6.825 ± 0.734

6.27 ± 0.584

2.063 ± 0.64

3.492 ± 0.212
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski