Lake Sarah-associated circular molecule 4

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 9.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A126G9Y1|A0A126G9Y1_9VIRU Uncharacterized protein OS=Lake Sarah-associated circular molecule 4 OX=1685729 PE=4 SV=1
MM1 pKa = 7.63VLEE4 pKa = 4.21YY5 pKa = 10.33HH6 pKa = 6.17RR7 pKa = 11.84QAGLVRR13 pKa = 11.84SQRR16 pKa = 11.84RR17 pKa = 11.84KK18 pKa = 10.22LVWATTDD25 pKa = 3.16QSVNIPAGQISNTNLAATLSVAGASLLGTTIMRR58 pKa = 11.84THH60 pKa = 6.67LRR62 pKa = 11.84IEE64 pKa = 4.08MTSIAGQATTDD75 pKa = 3.2QYY77 pKa = 11.36RR78 pKa = 11.84IGLIVGRR85 pKa = 11.84TSDD88 pKa = 3.23VGINVAGQQDD98 pKa = 3.97PSNPEE103 pKa = 4.13LDD105 pKa = 3.45WVHH108 pKa = 7.15LDD110 pKa = 3.54RR111 pKa = 11.84VIPTASGATVDD122 pKa = 4.31STQHH126 pKa = 4.93WVLDD130 pKa = 3.76NRR132 pKa = 11.84SKK134 pKa = 11.38RR135 pKa = 11.84KK136 pKa = 7.96MQEE139 pKa = 3.45LNQAYY144 pKa = 9.71LLCLQQNAAAARR156 pKa = 11.84TFNIFARR163 pKa = 11.84VLFALPP169 pKa = 3.59

Molecular weight: 18.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A126G9Y1|A0A126G9Y1_9VIRU Uncharacterized protein OS=Lake Sarah-associated circular molecule 4 OX=1685729 PE=4 SV=1
MM1 pKa = 7.63VLEE4 pKa = 4.21YY5 pKa = 10.33HH6 pKa = 6.17RR7 pKa = 11.84QAGLVRR13 pKa = 11.84SQRR16 pKa = 11.84RR17 pKa = 11.84KK18 pKa = 10.22LVWATTDD25 pKa = 3.16QSVNIPAGQISNTNLAATLSVAGASLLGTTIMRR58 pKa = 11.84THH60 pKa = 6.67LRR62 pKa = 11.84IEE64 pKa = 4.08MTSIAGQATTDD75 pKa = 3.2QYY77 pKa = 11.36RR78 pKa = 11.84IGLIVGRR85 pKa = 11.84TSDD88 pKa = 3.23VGINVAGQQDD98 pKa = 3.97PSNPEE103 pKa = 4.13LDD105 pKa = 3.45WVHH108 pKa = 7.15LDD110 pKa = 3.54RR111 pKa = 11.84VIPTASGATVDD122 pKa = 4.31STQHH126 pKa = 4.93WVLDD130 pKa = 3.76NRR132 pKa = 11.84SKK134 pKa = 11.38RR135 pKa = 11.84KK136 pKa = 7.96MQEE139 pKa = 3.45LNQAYY144 pKa = 9.71LLCLQQNAAAARR156 pKa = 11.84TFNIFARR163 pKa = 11.84VLFALPP169 pKa = 3.59

Molecular weight: 18.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

169

169

169

169.0

18.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.243 ± 0.0

0.592 ± 0.0

4.734 ± 0.0

2.367 ± 0.0

1.775 ± 0.0

5.917 ± 0.0

2.367 ± 0.0

5.917 ± 0.0

1.775 ± 0.0

10.651 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.367 ± 0.0

5.325 ± 0.0

2.959 ± 0.0

7.692 ± 0.0

7.692 ± 0.0

6.509 ± 0.0

8.876 ± 0.0

7.692 ± 0.0

1.775 ± 0.0

1.775 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski