Undibacterium piscinae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Undibacterium

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3332 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6M4A9B6|A0A6M4A9B6_9BURK Argininosuccinate synthase OS=Undibacterium piscinae OX=2495591 GN=argG PE=3 SV=1
MM1 pKa = 7.58CLICGWVYY9 pKa = 10.83EE10 pKa = 4.55EE11 pKa = 5.07EE12 pKa = 5.12LGLPDD17 pKa = 5.29DD18 pKa = 5.83GIPAGTKK25 pKa = 9.43WEE27 pKa = 4.21DD28 pKa = 3.31VPMNWTCPEE37 pKa = 3.86CGARR41 pKa = 11.84KK42 pKa = 9.6EE43 pKa = 4.09DD44 pKa = 4.18FEE46 pKa = 4.4MLAII50 pKa = 4.58

Molecular weight: 5.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6M4A7H5|A0A6M4A7H5_9BURK Nucleotide sugar dehydrogenase OS=Undibacterium piscinae OX=2495591 GN=EJG51_013365 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.57RR14 pKa = 11.84THH16 pKa = 5.79GFRR19 pKa = 11.84ARR21 pKa = 11.84MATRR25 pKa = 11.84GGRR28 pKa = 11.84AVLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 8.8RR41 pKa = 11.84LAAA44 pKa = 4.42

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3332

0

3332

1065376

35

3890

319.7

35.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.135 ± 0.054

0.935 ± 0.014

5.113 ± 0.03

5.336 ± 0.041

3.837 ± 0.035

7.308 ± 0.046

2.181 ± 0.022

5.75 ± 0.031

4.67 ± 0.035

10.85 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.694 ± 0.023

3.631 ± 0.039

4.319 ± 0.028

4.454 ± 0.039

5.342 ± 0.037

6.591 ± 0.04

5.146 ± 0.042

6.831 ± 0.034

1.279 ± 0.018

2.599 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski