Flavobacterium caeni

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3216 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G5GHP1|A0A1G5GHP1_9FLAO Starch-binding associating with outer membrane OS=Flavobacterium caeni OX=490189 GN=SAMN02927903_01579 PE=3 SV=1
MM1 pKa = 7.0MRR3 pKa = 11.84IFLFAAIGLLTACDD17 pKa = 4.34KK18 pKa = 11.24DD19 pKa = 4.15DD20 pKa = 3.95QNAMPYY26 pKa = 9.47YY27 pKa = 9.71VAPAGTADD35 pKa = 3.49VTLTMTGGSTYY46 pKa = 10.63EE47 pKa = 4.05LDD49 pKa = 4.72GPCGWAYY56 pKa = 10.61AGGVGYY62 pKa = 10.79VGANQTDD69 pKa = 3.49NSLKK73 pKa = 10.02TFSIDD78 pKa = 3.22TNLTEE83 pKa = 4.69LPSVTTTFTLTDD95 pKa = 3.86DD96 pKa = 5.21ALDD99 pKa = 4.13EE100 pKa = 5.26DD101 pKa = 4.16PTKK104 pKa = 11.14ARR106 pKa = 11.84IHH108 pKa = 5.31LTEE111 pKa = 4.03FVGSSFVSWDD121 pKa = 3.09STTASGQVTFAVNGNEE137 pKa = 4.01VTVDD141 pKa = 3.3LSGITLEE148 pKa = 4.79AEE150 pKa = 4.26SSNDD154 pKa = 3.16VPYY157 pKa = 11.1DD158 pKa = 3.65NNGTLSGTLKK168 pKa = 10.51FYY170 pKa = 10.84KK171 pKa = 10.46

Molecular weight: 18.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G5KNJ3|A0A1G5KNJ3_9FLAO Addiction module antidote protein HigA family OS=Flavobacterium caeni OX=490189 GN=SAMN02927903_03385 PE=4 SV=1
MM1 pKa = 7.52ILRR4 pKa = 11.84YY5 pKa = 9.18IYY7 pKa = 10.38KK8 pKa = 8.67PSRR11 pKa = 11.84RR12 pKa = 11.84ITAASLHH19 pKa = 6.31CGVFRR24 pKa = 11.84GRR26 pKa = 11.84KK27 pKa = 8.71FPFHH31 pKa = 7.29EE32 pKa = 4.49EE33 pKa = 4.08TLSSAEE39 pKa = 4.13RR40 pKa = 11.84TQSAA44 pKa = 3.51

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3216

0

3216

1096505

36

2774

341.0

38.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.868 ± 0.051

0.831 ± 0.017

5.647 ± 0.034

5.685 ± 0.052

5.188 ± 0.042

6.93 ± 0.053

1.904 ± 0.022

6.803 ± 0.041

6.599 ± 0.075

8.972 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.276 ± 0.025

5.555 ± 0.042

3.822 ± 0.033

3.855 ± 0.026

3.746 ± 0.039

6.041 ± 0.037

6.4 ± 0.093

6.8 ± 0.035

1.123 ± 0.017

3.956 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski