Halobaculum gomorrense

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Halorubraceae; Halobaculum

Average proteome isoelectric point is 4.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3149 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5QKD5|A0A1M5QKD5_9EURY 3-oxoacyl-[acyl-carrier protein] reductase OS=Halobaculum gomorrense OX=43928 GN=SAMN05443636_1933 PE=4 SV=1
MM1 pKa = 7.59GIDD4 pKa = 4.45PNFDD8 pKa = 3.82DD9 pKa = 4.06NRR11 pKa = 11.84EE12 pKa = 4.18HH13 pKa = 8.17VGEE16 pKa = 4.12EE17 pKa = 3.65NGLDD21 pKa = 3.13VWGPVDD27 pKa = 3.89PPEE30 pKa = 4.39KK31 pKa = 10.5LGIHH35 pKa = 6.29GAHH38 pKa = 6.12VAVDD42 pKa = 3.77YY43 pKa = 10.01DD44 pKa = 3.37ICIADD49 pKa = 4.36GACLEE54 pKa = 4.2NCPVDD59 pKa = 3.64VFDD62 pKa = 5.23WVDD65 pKa = 3.63TPDD68 pKa = 3.53HH69 pKa = 6.97PEE71 pKa = 3.86SEE73 pKa = 4.48KK74 pKa = 10.81KK75 pKa = 10.45VEE77 pKa = 4.04PTRR80 pKa = 11.84EE81 pKa = 4.05DD82 pKa = 3.22QCIDD86 pKa = 3.44CMLCVDD92 pKa = 4.88ICPVDD97 pKa = 5.13AIDD100 pKa = 3.92VDD102 pKa = 4.11ASRR105 pKa = 11.84SS106 pKa = 3.56

Molecular weight: 11.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5U3J6|A0A1M5U3J6_9EURY Sugar phosphate isomerase/epimerase OS=Halobaculum gomorrense OX=43928 GN=SAMN05443636_2907 PE=4 SV=1
MM1 pKa = 7.78DD2 pKa = 4.19WYY4 pKa = 11.03RR5 pKa = 11.84LLRR8 pKa = 11.84SAGTRR13 pKa = 11.84RR14 pKa = 11.84LSVDD18 pKa = 2.86QRR20 pKa = 11.84ALVALRR26 pKa = 11.84VAVGLLLLTDD36 pKa = 5.03LLLCTRR42 pKa = 11.84SLVFFYY48 pKa = 10.57TDD50 pKa = 2.98GGSLPRR56 pKa = 11.84SALFARR62 pKa = 11.84FPITANLSVHH72 pKa = 6.39ALFGGAWWVGLLFVAAAVAATALALGRR99 pKa = 11.84WTKK102 pKa = 10.34IAAACSLVLLVSLHH116 pKa = 5.79ARR118 pKa = 11.84NPIALNGGDD127 pKa = 3.43SLLRR131 pKa = 11.84RR132 pKa = 11.84TLLWSLFLPLGTGLTFEE149 pKa = 4.56TRR151 pKa = 11.84AQCRR155 pKa = 11.84HH156 pKa = 5.78PAAVGLLVQPIVLYY170 pKa = 10.34VVNAVIKK177 pKa = 10.74LRR179 pKa = 11.84GDD181 pKa = 2.92VWLSGEE187 pKa = 3.79AVKK190 pKa = 10.94YY191 pKa = 8.9VFRR194 pKa = 11.84IDD196 pKa = 3.08ALTRR200 pKa = 11.84FVGEE204 pKa = 3.96YY205 pKa = 9.87LAAYY209 pKa = 6.81PTLLDD214 pKa = 3.82ALGTAWVMLLCCSPLLVLTTGRR236 pKa = 11.84ARR238 pKa = 11.84ATVVAVFASAHH249 pKa = 5.35VGMALTLGIGLFPLIGVAALIPYY272 pKa = 8.51LPPTAWDD279 pKa = 3.44KK280 pKa = 11.98VEE282 pKa = 4.5GSWNRR287 pKa = 11.84SVKK290 pKa = 7.2TARR293 pKa = 11.84RR294 pKa = 11.84VGGEE298 pKa = 3.36RR299 pKa = 11.84RR300 pKa = 11.84AAFEE304 pKa = 4.37DD305 pKa = 3.59LWEE308 pKa = 4.41KK309 pKa = 10.53VCRR312 pKa = 11.84QIGRR316 pKa = 11.84LGRR319 pKa = 11.84GRR321 pKa = 11.84SLGAAPPMKK330 pKa = 10.12PMEE333 pKa = 4.75PLRR336 pKa = 11.84QRR338 pKa = 11.84IGTAGSGGRR347 pKa = 11.84TGSTSSLVSVDD358 pKa = 3.07RR359 pKa = 11.84GRR361 pKa = 11.84IATRR365 pKa = 11.84IRR367 pKa = 11.84RR368 pKa = 11.84IGRR371 pKa = 11.84AVAATMVVVVLIWNTASLGYY391 pKa = 10.4VEE393 pKa = 5.63VPQPEE398 pKa = 4.16AVEE401 pKa = 4.18VSPQEE406 pKa = 4.18TRR408 pKa = 11.84WDD410 pKa = 3.59MFAPSPPTRR419 pKa = 11.84DD420 pKa = 2.59VWYY423 pKa = 10.04VAVGTLEE430 pKa = 4.26DD431 pKa = 3.96GEE433 pKa = 4.34RR434 pKa = 11.84VEE436 pKa = 4.64VIRR439 pKa = 11.84GGEE442 pKa = 4.08PTWARR447 pKa = 11.84SEE449 pKa = 4.42RR450 pKa = 11.84RR451 pKa = 11.84WSSYY455 pKa = 10.36PSARR459 pKa = 11.84WRR461 pKa = 11.84KK462 pKa = 7.98YY463 pKa = 10.08LEE465 pKa = 3.95VVRR468 pKa = 11.84WSDD471 pKa = 3.77DD472 pKa = 3.17DD473 pKa = 3.37WLQRR477 pKa = 11.84HH478 pKa = 5.79FASGLCARR486 pKa = 11.84WDD488 pKa = 3.38ATHH491 pKa = 7.45RR492 pKa = 11.84SRR494 pKa = 11.84LSRR497 pKa = 11.84VTVYY501 pKa = 10.6VLSRR505 pKa = 11.84SVQSSTEE512 pKa = 4.01PNASEE517 pKa = 4.54GPSVRR522 pKa = 11.84RR523 pKa = 11.84TRR525 pKa = 11.84VRR527 pKa = 11.84THH529 pKa = 6.05EE530 pKa = 4.36CSSS533 pKa = 3.28

Molecular weight: 58.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3149

0

3149

922802

28

2162

293.0

31.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.492 ± 0.081

0.698 ± 0.014

8.802 ± 0.057

8.083 ± 0.069

3.175 ± 0.029

9.238 ± 0.042

1.937 ± 0.02

3.401 ± 0.036

1.637 ± 0.027

8.672 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.658 ± 0.02

2.089 ± 0.026

4.778 ± 0.027

2.049 ± 0.028

6.941 ± 0.05

5.231 ± 0.03

6.177 ± 0.035

9.35 ± 0.047

1.086 ± 0.017

2.506 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski