Kinneretia asaccharophila

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Kinneretia

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3851 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R6NAG0|A0A4R6NAG0_9BURK Uncharacterized protein OS=Kinneretia asaccharophila OX=582607 GN=DFR39_103432 PE=4 SV=1
MM1 pKa = 7.75ANTFYY6 pKa = 11.25VKK8 pKa = 10.55ASADD12 pKa = 3.6PSNLYY17 pKa = 10.1ALCTYY22 pKa = 8.74YY23 pKa = 10.54TDD25 pKa = 4.88PEE27 pKa = 4.42CQHH30 pKa = 6.25QVDD33 pKa = 4.15SPLRR37 pKa = 11.84IPQQAGGVTFQLVANGNNWQMVGAVADD64 pKa = 4.12RR65 pKa = 11.84VDD67 pKa = 3.64TPEE70 pKa = 4.46IDD72 pKa = 3.38PTMVLAANNAVTIAMPTSTKK92 pKa = 8.65ITEE95 pKa = 4.25GVVLVFTSTNVPTQLYY111 pKa = 10.13ASSDD115 pKa = 3.7PQVEE119 pKa = 4.28NTDD122 pKa = 3.28

Molecular weight: 13.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V3CKA3|A0A4V3CKA3_9BURK Uncharacterized protein OS=Kinneretia asaccharophila OX=582607 GN=DFR39_101692 PE=4 SV=1
MM1 pKa = 7.33KK2 pKa = 9.38RR3 pKa = 11.84TYY5 pKa = 9.73QASKK9 pKa = 7.81TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.8GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3851

0

3851

1324798

26

4304

344.0

37.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.255 ± 0.055

0.884 ± 0.012

4.79 ± 0.025

5.747 ± 0.037

3.21 ± 0.025

8.453 ± 0.045

2.147 ± 0.023

3.745 ± 0.032

2.99 ± 0.039

12.284 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.245 ± 0.021

2.316 ± 0.028

5.366 ± 0.036

4.738 ± 0.034

7.443 ± 0.045

5.66 ± 0.038

4.265 ± 0.031

6.823 ± 0.038

1.546 ± 0.018

2.093 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski