Acetobacter sp. DmW_043

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; unclassified Acetobacter

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2062 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y3G1X4|A0A1Y3G1X4_9PROT Copper resistance protein CopB OS=Acetobacter sp. DmW_043 OX=1670658 GN=HK11_05965 PE=4 SV=1
MM1 pKa = 7.37TYY3 pKa = 10.71VVTEE7 pKa = 3.55NCIRR11 pKa = 11.84CKK13 pKa = 10.72FMDD16 pKa = 4.33CVEE19 pKa = 4.27VCPVDD24 pKa = 3.86CFYY27 pKa = 11.41AGEE30 pKa = 4.18NFLVINPDD38 pKa = 2.99EE39 pKa = 5.52CIDD42 pKa = 4.08CGVCEE47 pKa = 4.44PEE49 pKa = 4.91CPAEE53 pKa = 4.95AIFPDD58 pKa = 3.6SDD60 pKa = 3.69DD61 pKa = 4.62RR62 pKa = 11.84ATAWAEE68 pKa = 3.89LNASYY73 pKa = 11.14AEE75 pKa = 3.9KK76 pKa = 10.08WPNITRR82 pKa = 11.84KK83 pKa = 8.19GTPPADD89 pKa = 3.35AEE91 pKa = 4.19EE92 pKa = 4.5WKK94 pKa = 10.67DD95 pKa = 3.77KK96 pKa = 10.67PGKK99 pKa = 8.94TDD101 pKa = 3.24MLSPEE106 pKa = 3.93PHH108 pKa = 6.73KK109 pKa = 11.19AA110 pKa = 3.16

Molecular weight: 12.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y3G7R4|A0A1Y3G7R4_9PROT Glycosyl transferase OS=Acetobacter sp. DmW_043 OX=1670658 GN=HK11_09915 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 8.99RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.7GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.32VIANRR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.46GRR39 pKa = 11.84KK40 pKa = 8.72RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2062

0

2062

677384

33

2121

328.5

35.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.98 ± 0.055

1.084 ± 0.019

5.222 ± 0.04

5.424 ± 0.064

3.729 ± 0.035

7.943 ± 0.053

2.41 ± 0.022

5.301 ± 0.043

3.707 ± 0.037

10.286 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.512 ± 0.023

3.048 ± 0.036

5.159 ± 0.041

3.756 ± 0.035

6.267 ± 0.055

6.407 ± 0.045

5.889 ± 0.039

7.165 ± 0.044

1.313 ± 0.021

2.396 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski