Capybara microvirus Cap1_SP_93

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W424|A0A4P8W424_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_93 OX=2584799 PE=4 SV=1
MM1 pKa = 7.72AFFPLNFFGASICEE15 pKa = 3.88FVPTEE20 pKa = 3.76KK21 pKa = 10.33RR22 pKa = 11.84YY23 pKa = 9.94ILSKK27 pKa = 10.99SIDD30 pKa = 3.68PNNEE34 pKa = 3.67NNVLTSGVLDD44 pKa = 3.91DD45 pKa = 5.12VPIFEE50 pKa = 4.93NSKK53 pKa = 10.63DD54 pKa = 4.0LPNPDD59 pKa = 3.76DD60 pKa = 3.57TDD62 pKa = 3.71LARR65 pKa = 11.84QLLLGSPIQDD75 pKa = 3.29YY76 pKa = 11.39SGTKK80 pKa = 9.26ILNGKK85 pKa = 8.12EE86 pKa = 3.98LVISDD91 pKa = 4.04SQANDD96 pKa = 3.22YY97 pKa = 10.61LAEE100 pKa = 4.18LEE102 pKa = 4.21KK103 pKa = 10.57TLVKK107 pKa = 10.82NN108 pKa = 3.91

Molecular weight: 12.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVN5|A0A4V1FVN5_9VIRU Replication initiator protein OS=Capybara microvirus Cap1_SP_93 OX=2584799 PE=4 SV=1
MM1 pKa = 7.49YY2 pKa = 11.11NMSTCYY8 pKa = 10.73NKK10 pKa = 9.97IEE12 pKa = 4.13IKK14 pKa = 10.62NPSVHH19 pKa = 5.89FRR21 pKa = 11.84KK22 pKa = 10.51NMDD25 pKa = 3.52KK26 pKa = 11.09LLLQVDD32 pKa = 4.65CGRR35 pKa = 11.84CDD37 pKa = 2.92SCLSQKK43 pKa = 10.39RR44 pKa = 11.84NNWYY48 pKa = 9.36VRR50 pKa = 11.84ARR52 pKa = 11.84FEE54 pKa = 5.31LMACLGQDD62 pKa = 3.0KK63 pKa = 10.17DD64 pKa = 3.64GHH66 pKa = 5.66YY67 pKa = 9.99VAPSGFCLFPTLTYY81 pKa = 10.69LSYY84 pKa = 10.85KK85 pKa = 10.18RR86 pKa = 11.84PSLHH90 pKa = 7.37IIDD93 pKa = 4.91EE94 pKa = 4.86FGDD97 pKa = 3.35DD98 pKa = 3.35WFFEE102 pKa = 4.45GFSYY106 pKa = 9.9QHH108 pKa = 5.62ITDD111 pKa = 3.95YY112 pKa = 11.65VNTIQTQYY120 pKa = 9.22KK121 pKa = 9.52RR122 pKa = 11.84KK123 pKa = 9.71YY124 pKa = 8.88NKK126 pKa = 9.27PDD128 pKa = 3.49DD129 pKa = 3.9GVRR132 pKa = 11.84YY133 pKa = 7.32MVCSEE138 pKa = 3.97YY139 pKa = 11.12GGNAEE144 pKa = 4.15YY145 pKa = 10.7LDD147 pKa = 4.0EE148 pKa = 5.7RR149 pKa = 11.84GLPRR153 pKa = 11.84IAQAAPHH160 pKa = 4.89YY161 pKa = 9.89HH162 pKa = 6.65CLLFFPARR170 pKa = 11.84ASKK173 pKa = 10.9DD174 pKa = 3.21SLYY177 pKa = 10.49WKK179 pKa = 10.19DD180 pKa = 3.56YY181 pKa = 10.96VSNLWRR187 pKa = 11.84KK188 pKa = 7.57QHH190 pKa = 6.92DD191 pKa = 3.87NALVGYY197 pKa = 8.85SKK199 pKa = 11.16SKK201 pKa = 9.96GAFVRR206 pKa = 11.84DD207 pKa = 3.51CDD209 pKa = 4.15AIKK212 pKa = 10.81YY213 pKa = 6.01VTSYY217 pKa = 10.5CHH219 pKa = 6.37KK220 pKa = 10.64QFDD223 pKa = 4.68YY224 pKa = 10.73YY225 pKa = 10.94QRR227 pKa = 11.84PEE229 pKa = 3.6LDD231 pKa = 2.83AYY233 pKa = 9.63IWHH236 pKa = 7.84DD237 pKa = 3.84YY238 pKa = 10.56IKK240 pKa = 10.87DD241 pKa = 3.48GFRR244 pKa = 11.84FQIPPMSQWKK254 pKa = 10.32DD255 pKa = 3.55NEE257 pKa = 3.92KK258 pKa = 10.99LEE260 pKa = 4.0YY261 pKa = 11.01LEE263 pKa = 4.03ILKK266 pKa = 10.4SRR268 pKa = 11.84RR269 pKa = 11.84EE270 pKa = 3.98EE271 pKa = 4.06LKK273 pKa = 10.9SIMPNHH279 pKa = 6.87WEE281 pKa = 3.91SGHH284 pKa = 6.55FGEE287 pKa = 6.22NCAKK291 pKa = 9.72WLSNLSLDD299 pKa = 3.48EE300 pKa = 4.11RR301 pKa = 11.84VNILSNGITFANDD314 pKa = 2.86TNLEE318 pKa = 4.04GKK320 pKa = 9.71LNHH323 pKa = 6.02YY324 pKa = 8.04VVPKK328 pKa = 10.54YY329 pKa = 10.62IFDD332 pKa = 3.67KK333 pKa = 10.8LYY335 pKa = 11.15YY336 pKa = 9.76DD337 pKa = 3.29IQYY340 pKa = 9.94QRR342 pKa = 11.84VYY344 pKa = 11.28DD345 pKa = 3.93EE346 pKa = 5.17DD347 pKa = 4.57LDD349 pKa = 4.93RR350 pKa = 11.84EE351 pKa = 4.48VLRR354 pKa = 11.84PALKK358 pKa = 10.4KK359 pKa = 9.54PTDD362 pKa = 3.65ILCKK366 pKa = 10.6DD367 pKa = 3.97FVSLFRR373 pKa = 11.84KK374 pKa = 9.81VYY376 pKa = 10.17NDD378 pKa = 3.28KK379 pKa = 10.82LLKK382 pKa = 10.19FNHH385 pKa = 6.53LFRR388 pKa = 11.84YY389 pKa = 7.92ITLCDD394 pKa = 3.51LTDD397 pKa = 3.9NEE399 pKa = 4.46ILQLKK404 pKa = 10.07NIDD407 pKa = 3.44NKK409 pKa = 10.59RR410 pKa = 11.84DD411 pKa = 3.62YY412 pKa = 10.58VKK414 pKa = 10.73NWTRR418 pKa = 11.84EE419 pKa = 3.77DD420 pKa = 3.68LYY422 pKa = 11.41SYY424 pKa = 11.18FEE426 pKa = 4.73DD427 pKa = 4.11FQSRR431 pKa = 11.84FSMEE435 pKa = 3.85RR436 pKa = 11.84LVSYY440 pKa = 10.37SYY442 pKa = 10.92IRR444 pKa = 11.84NTLFDD449 pKa = 4.51INTSLDD455 pKa = 3.85LLQMSDD461 pKa = 3.75EE462 pKa = 4.45DD463 pKa = 4.4FISNVEE469 pKa = 3.74DD470 pKa = 3.19HH471 pKa = 7.08KK472 pKa = 11.29IYY474 pKa = 11.03VSLSNKK480 pKa = 9.8SFSLKK485 pKa = 10.26KK486 pKa = 10.38GAEE489 pKa = 4.17PYY491 pKa = 10.43YY492 pKa = 10.94KK493 pKa = 10.42SDD495 pKa = 3.91DD496 pKa = 3.7YY497 pKa = 11.72KK498 pKa = 11.45HH499 pKa = 6.7NIRR502 pKa = 11.84NLIPYY507 pKa = 9.52RR508 pKa = 11.84EE509 pKa = 4.13PEE511 pKa = 3.86KK512 pKa = 11.04EE513 pKa = 4.21FILEE517 pKa = 3.83LGEE520 pKa = 4.42RR521 pKa = 11.84INLIKK526 pKa = 10.76SKK528 pKa = 10.72NRR530 pKa = 11.84LNAYY534 pKa = 7.42HH535 pKa = 7.57TIRR538 pKa = 11.84KK539 pKa = 8.13LQQQDD544 pKa = 3.5KK545 pKa = 10.18QNHH548 pKa = 6.51LLTSLIVV555 pKa = 3.26

Molecular weight: 66.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1728

108

678

432.0

49.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.382 ± 1.37

1.505 ± 0.412

7.465 ± 0.481

4.514 ± 0.898

5.035 ± 0.954

5.208 ± 0.714

2.199 ± 0.691

5.845 ± 0.102

6.076 ± 1.015

8.507 ± 1.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.488 ± 0.652

6.655 ± 0.379

3.993 ± 0.999

5.324 ± 1.201

4.282 ± 0.708

8.044 ± 0.674

5.324 ± 1.199

4.745 ± 0.252

1.62 ± 0.29

5.787 ± 0.976
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski