Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
Average proteome isoelectric point is 6.51
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 3178 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|B8DLS7|B8DLS7_DESVM STAS domain-containing protein OS=Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=DvMF_1505 PE=3 SV=1
MM1 pKa = 6.67 VTQNTTTGAAAAARR15 pKa = 11.84 HH16 pKa = 5.45 IQLTQPQANQQVVIDD31 pKa = 4.88 NIAGAALDD39 pKa = 3.44 MGFPSEE45 pKa = 4.11 AAQLEE50 pKa = 4.4 QSGQDD55 pKa = 3.16 LVFLFEE61 pKa = 4.27 NGGRR65 pKa = 11.84 IVLSNFFGLFDD76 pKa = 3.71 SHH78 pKa = 6.63 QLPAFNLEE86 pKa = 4.87 DD87 pKa = 4.18 GQSLPGDD94 pKa = 3.75 AFLAALRR101 pKa = 11.84 EE102 pKa = 4.21 DD103 pKa = 4.75 LLPAAGPGAGAAAGSGGVGDD123 pKa = 4.34 YY124 pKa = 11.41 ADD126 pKa = 4.72 DD127 pKa = 4.34 AGNLIGGVDD136 pKa = 3.56 RR137 pKa = 11.84 LDD139 pKa = 3.87 PLGTTTFGVQALPGIEE155 pKa = 4.16 DD156 pKa = 4.14 AGTLDD161 pKa = 4.33 LATGTLLVSLTTGISTTIGEE181 pKa = 4.17 NGNYY185 pKa = 9.12 PEE187 pKa = 5.52 HH188 pKa = 7.5 PDD190 pKa = 3.28 AVPPGTYY197 pKa = 10.23 VGVFEE202 pKa = 5.1 DD203 pKa = 3.91 WEE205 pKa = 4.71 PNQHH209 pKa = 6.52 LGSHH213 pKa = 5.99 MAFQAAFGFTFTPDD227 pKa = 3.4 DD228 pKa = 4.08 NEE230 pKa = 4.16 VLNTITFTGPITGHH244 pKa = 6.5 LLVNGVEE251 pKa = 4.14 VLPDD255 pKa = 3.35 GAGNYY260 pKa = 9.6 VIAAADD266 pKa = 3.87 LGNVSLLPNADD277 pKa = 3.68 SGTDD281 pKa = 3.21 IPLSGFATITDD292 pKa = 4.23 PDD294 pKa = 3.82 SGLTGTVPFTFTAVVDD310 pKa = 4.59 AVADD314 pKa = 3.84 QPIGLHH320 pKa = 4.98 EE321 pKa = 4.36 TVTYY325 pKa = 10.9 GPFHH329 pKa = 7.28 CEE331 pKa = 3.18 PGGNGEE337 pKa = 4.12 YY338 pKa = 10.91 GGDD341 pKa = 3.42 VRR343 pKa = 11.84 LLGVSEE349 pKa = 4.88 GPDD352 pKa = 3.29 GFHH355 pKa = 7.21 PPFPGHH361 pKa = 6.54 FNPHH365 pKa = 6.92 DD366 pKa = 4.13 APDD369 pKa = 4.39 GFWHH373 pKa = 6.18 KK374 pKa = 9.02 TAADD378 pKa = 3.82 PTNVEE383 pKa = 4.71 AGDD386 pKa = 3.79 HH387 pKa = 5.11 TQSAVHH393 pKa = 5.8 ITLSATFGDD402 pKa = 4.17 YY403 pKa = 10.36 QDD405 pKa = 3.51 GSEE408 pKa = 3.74 RR409 pKa = 11.84 HH410 pKa = 5.02 YY411 pKa = 11.17 LIIEE415 pKa = 4.26 AKK417 pKa = 10.34 EE418 pKa = 3.61 GWTYY422 pKa = 10.83 DD423 pKa = 3.33 TVKK426 pKa = 10.45 IGGVEE431 pKa = 4.08 LSLSEE436 pKa = 4.8 FLTQGSDD443 pKa = 2.88 IPASATQGSGVIDD456 pKa = 4.31 PNGHH460 pKa = 6.16 YY461 pKa = 10.42 YY462 pKa = 10.33 VIPVGDD468 pKa = 3.92 EE469 pKa = 4.67 SIVSTSSTVDD479 pKa = 3.43 GQGLTHH485 pKa = 6.89 EE486 pKa = 4.96 LATKK490 pKa = 10.45 AVTLTLYY497 pKa = 10.91 APDD500 pKa = 3.25 EE501 pKa = 4.65 HH502 pKa = 8.36 YY503 pKa = 11.03 EE504 pKa = 4.01 SGGNGEE510 pKa = 4.42 YY511 pKa = 9.95 PVPTIAMTEE520 pKa = 3.85 QGGDD524 pKa = 3.63 GQHH527 pKa = 6.77 CGPSGNDD534 pKa = 3.03 YY535 pKa = 8.68 HH536 pKa = 5.99 TQFVTGALAVDD547 pKa = 3.99 SDD549 pKa = 4.31 TDD551 pKa = 4.05 GSLTLINDD559 pKa = 3.28 NSLVLGSTTVWVAAADD575 pKa = 4.02 GTFHH579 pKa = 6.58 VTGQQIGYY587 pKa = 8.91 EE588 pKa = 4.07 DD589 pKa = 3.56 PQAYY593 pKa = 10.08 VNEE596 pKa = 4.07 PWYY599 pKa = 10.53 DD600 pKa = 3.53 PFSTKK605 pKa = 10.67 DD606 pKa = 2.83 IDD608 pKa = 5.27 LNFQFKK614 pKa = 10.66 GADD617 pKa = 3.8 DD618 pKa = 3.98 EE619 pKa = 4.45 MLDD622 pKa = 3.75 QIRR625 pKa = 11.84 IMVDD629 pKa = 3.27 PSTPAKK635 pKa = 10.12 VLIYY639 pKa = 9.93 GHH641 pKa = 6.46 EE642 pKa = 4.09 ATFVSDD648 pKa = 4.12 GEE650 pKa = 4.34 GGGYY654 pKa = 9.82 YY655 pKa = 9.8 VVPSYY660 pKa = 11.33 LKK662 pKa = 10.78 DD663 pKa = 3.35 HH664 pKa = 6.03 VTLMPAKK671 pKa = 10.66 DD672 pKa = 3.35 SDD674 pKa = 3.97 VDD676 pKa = 3.82 VKK678 pKa = 10.76 LTVTAVFHH686 pKa = 7.32 DD687 pKa = 4.6 PDD689 pKa = 5.12 SGDD692 pKa = 3.29 VAMKK696 pKa = 9.19 TVNHH700 pKa = 5.89 TVFIDD705 pKa = 3.95 AVADD709 pKa = 3.85 KK710 pKa = 10.64 PVDD713 pKa = 4.03 LDD715 pKa = 3.72 SDD717 pKa = 3.42 AHH719 pKa = 6.19 YY720 pKa = 10.87 IPGPSAADD728 pKa = 3.23 PHH730 pKa = 5.83 GTMGVTLSATFGDD743 pKa = 4.03 VLDD746 pKa = 4.93 GSEE749 pKa = 3.77 KK750 pKa = 10.27 HH751 pKa = 5.54 YY752 pKa = 11.09 LGIEE756 pKa = 4.14 MKK758 pKa = 10.77 SGWTYY763 pKa = 10.56 EE764 pKa = 4.03 SGGEE768 pKa = 3.93 VRR770 pKa = 11.84 WINGVKK776 pKa = 10.14 YY777 pKa = 9.11 MVYY780 pKa = 10.21 EE781 pKa = 4.17 VDD783 pKa = 4.61 PSDD786 pKa = 4.6 AGNAAKK792 pKa = 10.53 NLVIGVPDD800 pKa = 3.38 TDD802 pKa = 4.41 DD803 pKa = 4.96 RR804 pKa = 11.84 YY805 pKa = 7.4 TTTFKK810 pKa = 10.55 TIAIADD816 pKa = 3.89 EE817 pKa = 4.47 VNTNGVEE824 pKa = 4.18 WNSLNNEE831 pKa = 4.02 AYY833 pKa = 8.49 ITDD836 pKa = 4.01 TLRR839 pKa = 11.84 VTVDD843 pKa = 3.21 GADD846 pKa = 3.12 GCLRR850 pKa = 11.84 VSGSGYY856 pKa = 10.01 EE857 pKa = 4.0 DD858 pKa = 3.1 WMKK861 pKa = 10.75 NAHH864 pKa = 6.26 TGDD867 pKa = 3.7 DD868 pKa = 5.01 GITKK872 pKa = 8.63 THH874 pKa = 6.96 LDD876 pKa = 3.84 VNFSPADD883 pKa = 3.47 SIMDD887 pKa = 3.38 GRR889 pKa = 11.84 EE890 pKa = 3.72 VLDD893 pKa = 3.61 EE894 pKa = 4.34 VVVKK898 pKa = 9.38 FAGKK902 pKa = 10.47 AFTLVVGEE910 pKa = 4.02 GAGAHH915 pKa = 6.42 EE916 pKa = 4.33 YY917 pKa = 10.97 VIDD920 pKa = 3.74 GTAGHH925 pKa = 5.78 TQVTVGATDD934 pKa = 3.22 VDD936 pKa = 3.7 HH937 pKa = 7.19 LYY939 pKa = 10.49 IKK941 pKa = 10.39 APHH944 pKa = 7.09 DD945 pKa = 3.98 SAVDD949 pKa = 3.34 IPVTVTANFHH959 pKa = 6.75 DD960 pKa = 5.1 PSSGDD965 pKa = 3.69 LGTTTANATITIDD978 pKa = 3.5 AVADD982 pKa = 3.85 KK983 pKa = 8.96 PTDD986 pKa = 3.16 LHH988 pKa = 6.24 EE989 pKa = 4.34 AVNYY993 pKa = 10.24 GVGHH997 pKa = 7.38 DD998 pKa = 4.23 AADD1001 pKa = 4.24 PGNSLSVSVTATFGDD1016 pKa = 3.81 VLDD1019 pKa = 4.54 GSEE1022 pKa = 3.66 RR1023 pKa = 11.84 HH1024 pKa = 5.25 YY1025 pKa = 11.29 LGIEE1029 pKa = 4.02 MKK1031 pKa = 10.71 SGWDD1035 pKa = 3.64 YY1036 pKa = 11.51 PSGGSSQYY1044 pKa = 11.15 INGTWYY1050 pKa = 10.22 KK1051 pKa = 10.29 VYY1053 pKa = 10.45 EE1054 pKa = 4.35 VTSGDD1059 pKa = 3.89 DD1060 pKa = 3.19 SGTVTKK1066 pKa = 10.48 NLSLGVPNTDD1076 pKa = 2.25 GHH1078 pKa = 6.79 YY1079 pKa = 8.25 DD1080 pKa = 3.51 TTFKK1084 pKa = 10.54 TIAIATDD1091 pKa = 3.66 SEE1093 pKa = 4.82 GGSSLTSSNNTAYY1106 pKa = 9.65 TYY1108 pKa = 9.59 GTVDD1112 pKa = 3.44 VKK1114 pKa = 11.46 VDD1116 pKa = 3.59 GADD1119 pKa = 3.06 GCLNVSSGNGGFEE1132 pKa = 3.68 DD1133 pKa = 4.03 WMPNAHH1139 pKa = 6.35 TGDD1142 pKa = 3.57 MTVMKK1147 pKa = 9.09 TALNIGFTPDD1157 pKa = 2.97 EE1158 pKa = 4.44 NEE1160 pKa = 4.22 VVDD1163 pKa = 4.37 SLVIKK1168 pKa = 10.71 YY1169 pKa = 10.05 DD1170 pKa = 3.31 GRR1172 pKa = 11.84 PFTLVVGDD1180 pKa = 3.44 GAGAHH1185 pKa = 6.37 EE1186 pKa = 4.67 YY1187 pKa = 11.07 VLDD1190 pKa = 4.0 GTSGHH1195 pKa = 6.18 TSVTLTGTDD1204 pKa = 3.76 LAQHH1208 pKa = 6.81 LYY1210 pKa = 10.93 VKK1212 pKa = 10.08 TSTNSDD1218 pKa = 2.64 KK1219 pKa = 11.04 DD1220 pKa = 3.2 IPLEE1224 pKa = 4.08 VTANYY1229 pKa = 9.8 HH1230 pKa = 6.53 DD1231 pKa = 5.35 PNSGDD1236 pKa = 3.64 LGSATVDD1243 pKa = 3.08 HH1244 pKa = 6.27 TVKK1247 pKa = 10.16 IDD1249 pKa = 3.48 AVADD1253 pKa = 3.94 KK1254 pKa = 8.86 PTVTVDD1260 pKa = 3.36 VNDD1263 pKa = 4.16 SGDD1266 pKa = 3.71 GGSSFQTGEE1275 pKa = 3.81 AGTVHH1280 pKa = 5.4 VTASFPDD1287 pKa = 3.56 TDD1289 pKa = 3.34 GSEE1292 pKa = 3.94 NHH1294 pKa = 5.46 TVVLNVPDD1302 pKa = 4.27 GFTVSNLQGGTWNASAHH1319 pKa = 4.68 TVTWNVGSGGSFDD1332 pKa = 3.37 KK1333 pKa = 11.08 TITVTHH1339 pKa = 6.63 NGAADD1344 pKa = 4.06 GSHH1347 pKa = 6.57 GFTATATAQEE1357 pKa = 4.59 VGTSSSGAEE1366 pKa = 3.53 NYY1368 pKa = 10.43 NYY1370 pKa = 10.74 NNTASTTATDD1380 pKa = 3.6 AADD1383 pKa = 3.9 VNSGAAIHH1391 pKa = 6.29 WSITDD1396 pKa = 3.5 AANVSNVVQEE1406 pKa = 4.07 GDD1408 pKa = 3.71 LGVNGPPLAFTVGYY1422 pKa = 9.49 SGYY1425 pKa = 10.57 ALQPGEE1431 pKa = 4.2 TASIQLTGPAAGSTADD1447 pKa = 5.03 LADD1450 pKa = 3.55 FTNANNEE1457 pKa = 3.8 FAAALQAAVGAVSGVTYY1474 pKa = 10.68 DD1475 pKa = 3.46 ATTHH1479 pKa = 6.13 TLTFSYY1485 pKa = 10.23 GAPTSLTFFAKK1496 pKa = 10.48 VFGDD1500 pKa = 3.72 TVIEE1504 pKa = 4.11 SDD1506 pKa = 3.73 EE1507 pKa = 4.33 KK1508 pKa = 11.27 LVLTIQDD1515 pKa = 3.39 PHH1517 pKa = 7.67 FNGHH1521 pKa = 5.27 VGGTVVDD1528 pKa = 5.23 GIEE1531 pKa = 4.46 DD1532 pKa = 3.74 GFIIDD1537 pKa = 4.57 DD1538 pKa = 4.55 DD1539 pKa = 4.52 KK1540 pKa = 11.64 PIIVPPTGGGEE1551 pKa = 3.87 IGLSVQDD1558 pKa = 3.76 ADD1560 pKa = 3.9 AAGSGLTDD1568 pKa = 3.45 VDD1570 pKa = 3.69 TDD1572 pKa = 3.7 HH1573 pKa = 7.46 ANLDD1577 pKa = 3.78 FTAGSLPMTFSFDD1590 pKa = 2.69 IAAGHH1595 pKa = 6.0 EE1596 pKa = 4.02 PHH1598 pKa = 5.91 VTGLSTTTPISWAVDD1613 pKa = 3.02 GGTGNLIGSIDD1624 pKa = 3.77 GHH1626 pKa = 5.86 PAIILTLTPDD1636 pKa = 3.65 SGSHH1640 pKa = 5.68 AVGEE1644 pKa = 4.59 TVHH1647 pKa = 6.67 VNVEE1651 pKa = 4.07 VTLVDD1656 pKa = 4.1 PLLHH1660 pKa = 7.17 ADD1662 pKa = 3.52 GSTDD1666 pKa = 3.42 VVVSGIHH1673 pKa = 5.45 VSGTDD1678 pKa = 3.51 GVSPAVSGTVSVNVDD1693 pKa = 3.68 DD1694 pKa = 5.63 ASPTAVNDD1702 pKa = 3.19 VHH1704 pKa = 7.3 DD1705 pKa = 4.32 YY1706 pKa = 10.83 QGGITSNVVVMLDD1719 pKa = 3.32 VSGSMNDD1726 pKa = 3.82 DD1727 pKa = 3.73 ANGNAPGTDD1736 pKa = 3.07 SRR1738 pKa = 11.84 LTMAIDD1744 pKa = 5.41 AINQLLHH1751 pKa = 7.15 AYY1753 pKa = 9.87 DD1754 pKa = 4.59 DD1755 pKa = 4.29 LGAVNVKK1762 pKa = 9.77 LVWFDD1767 pKa = 5.57 DD1768 pKa = 3.78 SAQTHH1773 pKa = 5.92 TGWLMGTTAVQQALTILEE1791 pKa = 4.44 GNLNGGGATNYY1802 pKa = 9.84 DD1803 pKa = 3.33 AAINLVMSQLGTTGTPPADD1822 pKa = 3.17 KK1823 pKa = 9.94 TVAYY1827 pKa = 9.19 FLSDD1831 pKa = 3.96 GEE1833 pKa = 4.36 PNRR1836 pKa = 11.84 PDD1838 pKa = 3.22 GSEE1841 pKa = 4.34 GISGSEE1847 pKa = 3.56 QTTWEE1852 pKa = 4.12 TFLAANNFDD1861 pKa = 3.48 MVYY1864 pKa = 10.9 ALGIGTGISGNTGEE1878 pKa = 4.95 LNPIGWEE1885 pKa = 3.91 SGTTSNADD1893 pKa = 3.15 VVTIITDD1900 pKa = 3.81 MSQLADD1906 pKa = 3.72 YY1907 pKa = 10.41 LVSTVPTTGNLLTNDD1922 pKa = 3.34 SGGADD1927 pKa = 3.46 GGKK1930 pKa = 9.95 ALYY1933 pKa = 10.32 SITVDD1938 pKa = 3.68 GVTHH1942 pKa = 6.56 YY1943 pKa = 10.44 IGEE1946 pKa = 4.14 SDD1948 pKa = 4.44 ADD1950 pKa = 3.62 HH1951 pKa = 7.14 KK1952 pKa = 11.2 LALDD1956 pKa = 3.55 LHH1958 pKa = 6.72 DD1959 pKa = 4.98 GKK1961 pKa = 10.58 GTLTVDD1967 pKa = 4.38 FDD1969 pKa = 4.22 DD1970 pKa = 4.56 GSYY1973 pKa = 10.89 VFSPGATPTGTEE1985 pKa = 4.05 VIGYY1989 pKa = 8.65 DD1990 pKa = 3.81 IKK1992 pKa = 11.4 DD1993 pKa = 3.34 ADD1995 pKa = 4.18 GTHH1998 pKa = 6.55 SNATLTLNLFGSEE2011 pKa = 4.3 LDD2013 pKa = 3.28 AHH2015 pKa = 6.79 DD2016 pKa = 4.04 NHH2018 pKa = 6.78 VSTAASSSTVVGNFSSASDD2037 pKa = 3.29 WDD2039 pKa = 4.01 GWSHH2043 pKa = 6.51 SGNVSIEE2050 pKa = 4.01 SGEE2053 pKa = 4.13 LKK2055 pKa = 10.68 LVLNSSGSGSSSVEE2069 pKa = 3.79 TSQSFTGVAAGDD2081 pKa = 3.7 KK2082 pKa = 10.1 LTFDD2086 pKa = 3.57 WRR2088 pKa = 11.84 AVPTGNTSNHH2098 pKa = 6.45 DD2099 pKa = 3.39 SDD2101 pKa = 4.17 YY2102 pKa = 11.21 VEE2104 pKa = 4.56 VVINRR2109 pKa = 11.84 SGGSSGDD2116 pKa = 3.29 ATVAVYY2122 pKa = 7.37 TVPANGSASGEE2133 pKa = 3.94 QHH2135 pKa = 6.59 FSYY2138 pKa = 10.75 QFTQSGNYY2146 pKa = 9.53 SVTIRR2151 pKa = 11.84 AADD2154 pKa = 3.98 GSSSGGSGSNGGLNLFIDD2172 pKa = 4.56 DD2173 pKa = 3.94 VALISAAAAIMGNVVTDD2190 pKa = 4.44 ASATEE2195 pKa = 4.11 YY2196 pKa = 10.68 VDD2198 pKa = 4.28 QIGGHH2203 pKa = 5.06 TALVTEE2209 pKa = 4.68 VNGHH2213 pKa = 6.88 ALAQDD2218 pKa = 3.89 GSFSDD2223 pKa = 3.66 FTTDD2227 pKa = 4.12 YY2228 pKa = 9.12 GTLHH2232 pKa = 6.49 INAFGEE2238 pKa = 4.14 YY2239 pKa = 9.31 TYY2241 pKa = 10.51 TPKK2244 pKa = 10.88 AGVDD2248 pKa = 3.39 GHH2250 pKa = 7.32 DD2251 pKa = 3.88 DD2252 pKa = 3.53 NFVYY2256 pKa = 10.74 KK2257 pKa = 10.63 LASTEE2262 pKa = 4.21 AGDD2265 pKa = 3.81 TSHH2268 pKa = 7.76 DD2269 pKa = 3.9 YY2270 pKa = 9.98 ATLSVHH2276 pKa = 6.94 LGTAASAAPVSTAAHH2291 pKa = 5.6 SMSGTEE2297 pKa = 4.38 HH2298 pKa = 7.31 FYY2300 pKa = 11.05 QGDD2303 pKa = 3.91 EE2304 pKa = 3.9 NHH2306 pKa = 5.64 NTINGTSGDD2315 pKa = 3.92 DD2316 pKa = 3.47 VIFGHH2321 pKa = 6.77 GGNDD2325 pKa = 3.43 IIHH2328 pKa = 6.72 GNAGHH2333 pKa = 7.58 DD2334 pKa = 4.03 YY2335 pKa = 10.6 LHH2337 pKa = 7.05 GGAGNDD2343 pKa = 3.45 FLYY2346 pKa = 11.23 GEE2348 pKa = 4.91 GGNDD2352 pKa = 2.97 ILVGGQGGDD2361 pKa = 3.35 TLTGGTGADD2370 pKa = 3.15 TFVWNAEE2377 pKa = 4.16 DD2378 pKa = 3.96 FTSGATDD2385 pKa = 3.13 VVTDD2389 pKa = 4.8 FKK2391 pKa = 11.12 PGASGEE2397 pKa = 4.05 NDD2399 pKa = 3.2 VLRR2402 pKa = 11.84 FADD2405 pKa = 3.74 VLLDD2409 pKa = 3.73 HH2410 pKa = 7.68 DD2411 pKa = 5.09 GNSANGISTSLIASGDD2427 pKa = 3.61 LTQVGSSNDD2436 pKa = 3.37 VQLTLHH2442 pKa = 6.71 HH2443 pKa = 6.73 GGAMQHH2449 pKa = 5.34 VTLQGALEE2457 pKa = 4.43 HH2458 pKa = 6.08 NTLAEE2463 pKa = 4.17 IEE2465 pKa = 4.09 QHH2467 pKa = 6.07 ILTNKK2472 pKa = 10.07 IITEE2476 pKa = 4.06 HH2477 pKa = 5.83 SS2478 pKa = 3.29
Molecular weight: 256.34 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 3.745
IPC2_protein 3.935
IPC_protein 3.999
Toseland 3.77
ProMoST 4.164
Dawson 3.999
Bjellqvist 4.139
Wikipedia 3.935
Rodwell 3.821
Grimsley 3.681
Solomon 3.999
Lehninger 3.948
Nozaki 4.101
DTASelect 4.38
Thurlkill 3.821
EMBOSS 3.948
Sillero 4.126
Patrickios 1.341
IPC_peptide 3.986
IPC2_peptide 4.101
IPC2.peptide.svr19 3.978
Protein with the highest isoelectric point:
>tr|B8DP48|B8DP48_DESVM Ribonuclease R OS=Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=rnr PE=3 SV=1
MM1 pKa = 7.74 SKK3 pKa = 8.95 RR4 pKa = 11.84 TYY6 pKa = 9.91 QPSKK10 pKa = 9.55 IRR12 pKa = 11.84 RR13 pKa = 11.84 KK14 pKa = 7.79 RR15 pKa = 11.84 TCGFRR20 pKa = 11.84 VRR22 pKa = 11.84 MSTANGRR29 pKa = 11.84 AVIRR33 pKa = 11.84 RR34 pKa = 11.84 RR35 pKa = 11.84 RR36 pKa = 11.84 AKK38 pKa = 9.76 GRR40 pKa = 11.84 KK41 pKa = 8.85 RR42 pKa = 11.84 LALL45 pKa = 3.85
Molecular weight: 5.38 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.371
IPC2_protein 10.935
IPC_protein 12.369
Toseland 12.53
ProMoST 13.027
Dawson 12.53
Bjellqvist 12.53
Wikipedia 13.013
Rodwell 12.193
Grimsley 12.574
Solomon 13.027
Lehninger 12.925
Nozaki 12.53
DTASelect 12.53
Thurlkill 12.53
EMBOSS 13.027
Sillero 12.53
Patrickios 11.93
IPC_peptide 13.027
IPC2_peptide 12.018
IPC2.peptide.svr19 9.094
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
3178
0
3178
1107925
29
2537
348.6
37.7
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
12.565 ± 0.071
1.304 ± 0.018
5.761 ± 0.033
5.657 ± 0.038
3.366 ± 0.025
8.953 ± 0.043
2.297 ± 0.024
4.023 ± 0.041
2.942 ± 0.044
10.526 ± 0.048
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.689 ± 0.02
2.398 ± 0.025
5.76 ± 0.046
3.009 ± 0.023
7.535 ± 0.051
4.893 ± 0.03
5.245 ± 0.03
7.732 ± 0.044
1.18 ± 0.017
2.165 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here