Thermoplasmatales archaeon SCGC AB-539-C06

Taxonomy: cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; unclassified Thermoplasmatales

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 780 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|N6WMI6|N6WMI6_9ARCH Uncharacterized protein (Fragment) OS=Thermoplasmatales archaeon SCGC AB-539-C06 OX=1242690 GN=MBGDC06_00790 PE=4 SV=1
MM1 pKa = 7.34GKK3 pKa = 10.1KK4 pKa = 10.02SVILLLIGLLIFSNSGFNQIEE25 pKa = 3.98NTKK28 pKa = 10.44AVEE31 pKa = 4.05TTFYY35 pKa = 11.31VDD37 pKa = 5.02DD38 pKa = 6.15DD39 pKa = 4.13GLEE42 pKa = 4.37DD43 pKa = 3.8YY44 pKa = 11.85VNIQYY49 pKa = 10.85AIDD52 pKa = 3.66NASIGDD58 pKa = 3.82TVYY61 pKa = 10.86VYY63 pKa = 10.39HH64 pKa = 7.4GYY66 pKa = 10.4YY67 pKa = 9.92KK68 pKa = 10.84EE69 pKa = 3.8NLVINKK75 pKa = 9.52SISLIGEE82 pKa = 4.17DD83 pKa = 4.84KK84 pKa = 11.46GNTTIDD90 pKa = 3.21GSNDD94 pKa = 2.92VTVGIFSDD102 pKa = 3.94NVEE105 pKa = 4.18LTGFTIKK112 pKa = 10.79NGTNGIMINGSSEE125 pKa = 4.21TIVAEE130 pKa = 3.73NTIIDD135 pKa = 4.16TEE137 pKa = 4.17YY138 pKa = 11.2GIYY141 pKa = 10.29VDD143 pKa = 5.25NKK145 pKa = 9.43SANNTIYY152 pKa = 11.22NNNFLSNIQNAYY164 pKa = 10.38DD165 pKa = 3.57LSTNIWHH172 pKa = 6.27YY173 pKa = 11.43ASNGNYY179 pKa = 8.2WDD181 pKa = 4.85DD182 pKa = 3.68YY183 pKa = 11.01MGIDD187 pKa = 4.92SDD189 pKa = 5.11DD190 pKa = 3.85NGIGDD195 pKa = 3.88TPYY198 pKa = 10.96NISGGNNQDD207 pKa = 3.23IYY209 pKa = 11.17PLMEE213 pKa = 5.96PITEE217 pKa = 4.33KK218 pKa = 10.68PDD220 pKa = 3.37ADD222 pKa = 3.82FTYY225 pKa = 10.62LPSNPTTQDD234 pKa = 3.14VIQFNDD240 pKa = 3.05TSTDD244 pKa = 3.23LDD246 pKa = 4.23GYY248 pKa = 9.41IVSWSWDD255 pKa = 3.48FGDD258 pKa = 5.06GNISMEE264 pKa = 3.98QNATHH269 pKa = 7.41RR270 pKa = 11.84YY271 pKa = 9.32DD272 pKa = 4.3DD273 pKa = 3.71NGVYY277 pKa = 10.57NVTLKK282 pKa = 9.34ITDD285 pKa = 3.42NYY287 pKa = 10.23GATDD291 pKa = 4.42EE292 pKa = 4.63ISRR295 pKa = 11.84QLGVLNVGPTADD307 pKa = 3.73FVYY310 pKa = 10.82SPLNPTDD317 pKa = 3.69LQNVIFTDD325 pKa = 3.59KK326 pKa = 11.27SSDD329 pKa = 3.53LDD331 pKa = 3.65GDD333 pKa = 3.75IVDD336 pKa = 4.68WYY338 pKa = 10.1WDD340 pKa = 3.72LGDD343 pKa = 4.63GNTSKK348 pKa = 10.72LQSPSYY354 pKa = 10.57QYY356 pKa = 11.51GDD358 pKa = 3.15NGTYY362 pKa = 10.06IVTLTITDD370 pKa = 3.85DD371 pKa = 4.35DD372 pKa = 4.53GVSEE376 pKa = 4.41VTSQQISVSNVGPIIDD392 pKa = 3.77FAFFSANVTIIVNDD406 pKa = 3.68PVLFSDD412 pKa = 4.98KK413 pKa = 11.4SEE415 pKa = 4.77DD416 pKa = 3.66LDD418 pKa = 4.28GDD420 pKa = 3.86IVIWSWDD427 pKa = 3.61FGDD430 pKa = 4.97GATSTKK436 pKa = 10.2KK437 pKa = 10.13HH438 pKa = 5.51PTHH441 pKa = 6.65NYY443 pKa = 7.11EE444 pKa = 4.11KK445 pKa = 10.33KK446 pKa = 9.11GTYY449 pKa = 8.8TVTLTVTDD457 pKa = 3.73NDD459 pKa = 4.26GVSSTKK465 pKa = 9.62TKK467 pKa = 10.48YY468 pKa = 8.77ITVSVYY474 pKa = 10.27VEE476 pKa = 3.9PNEE479 pKa = 3.93LVKK482 pKa = 10.95GFSTFDD488 pKa = 2.82IFFVVFLIIMVGLVIFLSRR507 pKa = 11.84KK508 pKa = 9.02YY509 pKa = 10.82GG510 pKa = 3.35

Molecular weight: 56.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|N6VWM2|N6VWM2_9ARCH Acetyltransferase OS=Thermoplasmatales archaeon SCGC AB-539-C06 OX=1242690 GN=MBGDC06_00010 PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 10.23IKK4 pKa = 9.33TRR6 pKa = 11.84KK7 pKa = 8.94KK8 pKa = 8.48VYY10 pKa = 10.4GRR12 pKa = 11.84IKK14 pKa = 9.73GCEE17 pKa = 3.3RR18 pKa = 11.84CGRR21 pKa = 11.84KK22 pKa = 9.31RR23 pKa = 11.84GLIRR27 pKa = 11.84RR28 pKa = 11.84YY29 pKa = 9.8GLHH32 pKa = 7.31LCRR35 pKa = 11.84QCFRR39 pKa = 11.84EE40 pKa = 3.94KK41 pKa = 10.93AEE43 pKa = 4.21EE44 pKa = 3.99IGFKK48 pKa = 10.37KK49 pKa = 10.85YY50 pKa = 10.21SS51 pKa = 3.24

Molecular weight: 6.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

780

0

780

164750

22

1147

211.2

23.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.658 ± 0.125

1.339 ± 0.05

5.845 ± 0.1

6.778 ± 0.116

4.522 ± 0.081

6.987 ± 0.11

1.818 ± 0.038

9.249 ± 0.12

8.407 ± 0.147

8.456 ± 0.117

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.562 ± 0.049

5.17 ± 0.106

3.635 ± 0.058

2.452 ± 0.05

3.775 ± 0.074

6.281 ± 0.078

5.423 ± 0.095

6.608 ± 0.089

1.212 ± 0.042

3.824 ± 0.067
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski