Candidatus Sedimenticola endophacoides

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Sedimenticola

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A657PQL3|A0A657PQL3_9GAMM Cell division protein ZapE (Fragment) OS=Candidatus Sedimenticola endophacoides OX=2548426 GN=B0D84_00060 PE=4 SV=1
MM1 pKa = 7.52NDD3 pKa = 3.4AVTDD7 pKa = 3.93APLEE11 pKa = 4.17FTPSAAAKK19 pKa = 9.59VAALIQEE26 pKa = 4.35EE27 pKa = 4.87GNPGLMLRR35 pKa = 11.84VYY37 pKa = 9.87IQGGGCSGFQYY48 pKa = 10.82GFAFDD53 pKa = 4.38EE54 pKa = 4.54EE55 pKa = 4.6EE56 pKa = 4.65KK57 pKa = 11.14EE58 pKa = 3.71GDD60 pKa = 3.4TRR62 pKa = 11.84VEE64 pKa = 3.91RR65 pKa = 11.84DD66 pKa = 3.39GVTLLVDD73 pKa = 4.1PMSMQYY79 pKa = 11.63LMGAEE84 pKa = 3.76VDD86 pKa = 4.08YY87 pKa = 11.87VEE89 pKa = 5.28GLQGSQFVIRR99 pKa = 11.84NPNASTTCGCGSSFSVV115 pKa = 3.54

Molecular weight: 12.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A657Q7Q1|A0A657Q7Q1_9GAMM Uncharacterized protein OS=Candidatus Sedimenticola endophacoides OX=2548426 GN=B0D84_04205 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 9.97RR12 pKa = 11.84ARR14 pKa = 11.84AHH16 pKa = 6.26GFRR19 pKa = 11.84ARR21 pKa = 11.84MATRR25 pKa = 11.84NGRR28 pKa = 11.84KK29 pKa = 9.4VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.33GRR39 pKa = 11.84VRR41 pKa = 11.84LTPP44 pKa = 3.82

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1190

0

1190

301048

28

1405

253.0

27.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.195 ± 0.086

1.057 ± 0.033

5.438 ± 0.056

6.94 ± 0.072

3.558 ± 0.049

8.61 ± 0.068

2.434 ± 0.036

5.336 ± 0.042

2.975 ± 0.054

11.319 ± 0.101

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.559 ± 0.038

2.743 ± 0.042

4.789 ± 0.049

3.759 ± 0.052

7.832 ± 0.081

5.167 ± 0.052

4.572 ± 0.045

6.931 ± 0.061

1.185 ± 0.025

2.601 ± 0.042
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski