La Joya virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Hapavirus; La Joya hapavirus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R1C8|A0A0D3R1C8_9RHAB Uncharacterized protein OS=La Joya virus OX=1272946 PE=4 SV=1
MM1 pKa = 8.11DD2 pKa = 4.86FNLDD6 pKa = 3.64QEE8 pKa = 4.88EE9 pKa = 4.4KK10 pKa = 10.36SHH12 pKa = 6.71PLFFNVEE19 pKa = 3.31IHH21 pKa = 5.65IGYY24 pKa = 9.42RR25 pKa = 11.84GPYY28 pKa = 9.17FDD30 pKa = 6.46SNDD33 pKa = 3.96LLTQIDD39 pKa = 3.98KK40 pKa = 10.25MIEE43 pKa = 4.03SRR45 pKa = 11.84PSSSNHH51 pKa = 5.27TDD53 pKa = 4.49LIRR56 pKa = 11.84LAIGLGLAHH65 pKa = 6.75CVHH68 pKa = 6.2SQITPTLWNLNGSFMGVLKK87 pKa = 11.04LPDD90 pKa = 3.73YY91 pKa = 10.12PVNPTVHH98 pKa = 5.39TVVGQEE104 pKa = 3.74ITDD107 pKa = 3.9GCGLLYY113 pKa = 10.11PDD115 pKa = 3.84ISVYY119 pKa = 10.41SKK121 pKa = 10.6IYY123 pKa = 10.34IMLGNEE129 pKa = 4.48SKK131 pKa = 10.76VQDD134 pKa = 4.95IITHH138 pKa = 6.74WYY140 pKa = 7.14TGEE143 pKa = 4.17GGVCYY148 pKa = 9.65EE149 pKa = 4.65YY150 pKa = 11.1DD151 pKa = 3.39FSLPTVAGALKK162 pKa = 10.41FEE164 pKa = 4.5HH165 pKa = 6.92LFLL168 pKa = 6.29

Molecular weight: 18.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1B8|A0A0D3R1B8_9RHAB Glycoprotein OS=La Joya virus OX=1272946 PE=4 SV=1
MM1 pKa = 7.41IKK3 pKa = 10.14EE4 pKa = 3.85FSKK7 pKa = 10.43IGKK10 pKa = 8.68NLLDD14 pKa = 3.88MKK16 pKa = 9.4WYY18 pKa = 9.76CPSIARR24 pKa = 11.84GSGSKK29 pKa = 10.4SLLCHH34 pKa = 7.08LLAPNGRR41 pKa = 11.84LMDD44 pKa = 4.53PMDD47 pKa = 3.58IMMNISPKK55 pKa = 10.5CGIHH59 pKa = 7.58LLMPVLRR66 pKa = 11.84SKK68 pKa = 10.16GICVKK73 pKa = 10.23KK74 pKa = 10.45RR75 pKa = 11.84PGMPNVKK82 pKa = 10.09KK83 pKa = 10.81LGTFQPLKK91 pKa = 9.89AQPLMRR97 pKa = 11.84HH98 pKa = 6.16PLTRR102 pKa = 11.84MTVEE106 pKa = 3.82LHH108 pKa = 5.28SFYY111 pKa = 10.58IKK113 pKa = 10.32RR114 pKa = 11.84VNSWSPSSHH123 pKa = 6.39HH124 pKa = 5.96SHH126 pKa = 7.45AIGITSTSTLKK137 pKa = 10.84HH138 pKa = 5.61LL139 pKa = 4.54

Molecular weight: 15.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14

0

14

5028

69

2119

359.1

40.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.898 ± 0.502

1.71 ± 0.202

5.469 ± 0.314

5.111 ± 0.29

5.052 ± 0.295

6.046 ± 0.261

3.142 ± 0.267

7.359 ± 0.36

6.543 ± 0.374

10.561 ± 0.524

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.566 ± 0.225

4.873 ± 0.223

5.251 ± 0.337

3.142 ± 0.202

4.018 ± 0.335

8.473 ± 0.425

5.529 ± 0.251

5.27 ± 0.377

1.909 ± 0.165

4.077 ± 0.272
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski