Neisseria sicca ATCC 29256

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria sicca

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3646 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C6MAQ8|C6MAQ8_NEISI Uncharacterized protein OS=Neisseria sicca ATCC 29256 OX=547045 GN=NEISICOT_03640 PE=4 SV=1
MM1 pKa = 7.33NLDD4 pKa = 2.82KK5 pKa = 10.66FYY7 pKa = 10.87RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.9ISISEE15 pKa = 4.36VIDD18 pKa = 3.58CARR21 pKa = 11.84LFNDD25 pKa = 4.42DD26 pKa = 4.57DD27 pKa = 3.82TDD29 pKa = 3.69KK30 pKa = 10.82FAKK33 pKa = 10.07FPYY36 pKa = 9.7IYY38 pKa = 9.94ISSDD42 pKa = 3.11EE43 pKa = 4.66DD44 pKa = 3.6EE45 pKa = 5.52SILDD49 pKa = 4.2LEE51 pKa = 4.91TVCYY55 pKa = 10.3LDD57 pKa = 4.26NGPKK61 pKa = 10.05IMDD64 pKa = 3.96GKK66 pKa = 10.79EE67 pKa = 3.75VFPDD71 pKa = 4.4FVNEE75 pKa = 3.87NGLDD79 pKa = 3.6ILCSGNVFMDD89 pKa = 3.76VYY91 pKa = 11.51DD92 pKa = 5.11DD93 pKa = 4.26LDD95 pKa = 3.34EE96 pKa = 5.43RR97 pKa = 11.84YY98 pKa = 10.06PNFTKK103 pKa = 10.7DD104 pKa = 3.37QFIDD108 pKa = 3.28ALNYY112 pKa = 10.97YY113 pKa = 8.88MDD115 pKa = 4.43NDD117 pKa = 4.43DD118 pKa = 4.49YY119 pKa = 11.82IEE121 pKa = 3.92FF122 pKa = 4.64

Molecular weight: 14.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C6M575|C6M575_NEISI Uncharacterized protein OS=Neisseria sicca ATCC 29256 OX=547045 GN=NEISICOT_01675 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.14QPSVTKK11 pKa = 10.56RR12 pKa = 11.84KK13 pKa = 7.91RR14 pKa = 11.84THH16 pKa = 5.89GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3646

0

3646

821177

34

3862

225.2

25.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.72 ± 0.067

1.131 ± 0.017

5.315 ± 0.041

6.041 ± 0.057

4.445 ± 0.035

7.25 ± 0.059

2.218 ± 0.024

5.777 ± 0.042

5.663 ± 0.04

9.873 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.531 ± 0.025

4.229 ± 0.049

4.226 ± 0.037

4.289 ± 0.032

5.369 ± 0.049

5.699 ± 0.033

5.208 ± 0.043

6.627 ± 0.045

1.291 ± 0.021

3.099 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski