Yersinia phage phiYeO3-12

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teetrevirus; Yersinia virus YeO3-12

Average proteome isoelectric point is 7.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 59 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9FZX9|Q9FZX9_9CAUD Putative 0.45 protein OS=Yersinia phage phiYeO3-12 OX=110457 GN=0.45 PE=4 SV=1
MM1 pKa = 7.73IMPKK5 pKa = 10.08SDD7 pKa = 3.6TVTMTRR13 pKa = 11.84DD14 pKa = 2.64AWNDD18 pKa = 2.85VSAYY22 pKa = 9.32IDD24 pKa = 3.7KK25 pKa = 11.04LEE27 pKa = 4.85KK28 pKa = 10.7DD29 pKa = 4.0LEE31 pKa = 4.14FLNALKK37 pKa = 10.74ACGVDD42 pKa = 3.06NWDD45 pKa = 3.98GYY47 pKa = 10.81SDD49 pKa = 4.02AVEE52 pKa = 4.1MVYY55 pKa = 11.01GEE57 pKa = 4.71DD58 pKa = 4.8DD59 pKa = 3.52EE60 pKa = 5.21

Molecular weight: 6.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9T0Z4|Q9T0Z4_9CAUD Terminase large subunit OS=Yersinia phage phiYeO3-12 OX=110457 GN=19 PE=3 SV=1
MM1 pKa = 7.39GTPQSSGLRR10 pKa = 11.84SIRR13 pKa = 11.84VAVRR17 pKa = 11.84KK18 pKa = 7.11TCTMATVWPRR28 pKa = 11.84CSAKK32 pKa = 10.38SSTMGSRR39 pKa = 11.84CSKK42 pKa = 10.41VNRR45 pKa = 11.84LTPCASIWKK54 pKa = 7.91TCVSVSWNTVRR65 pKa = 11.84LASLCSSCSTRR76 pKa = 11.84TT77 pKa = 3.28

Molecular weight: 8.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

59

0

59

13951

25

1320

236.5

26.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.354 ± 0.472

1.19 ± 0.229

6.107 ± 0.29

6.924 ± 0.335

3.512 ± 0.213

7.648 ± 0.321

2.014 ± 0.177

5.096 ± 0.176

6.645 ± 0.359

8.128 ± 0.313

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.874 ± 0.173

4.322 ± 0.313

3.598 ± 0.225

3.957 ± 0.3

5.964 ± 0.254

5.878 ± 0.345

5.512 ± 0.277

6.573 ± 0.272

1.555 ± 0.172

3.147 ± 0.172
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski