Corynebacterium epidermidicanis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae;

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2448 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0G3GXK3|A0A0G3GXK3_9CORY Winged helix DNA-binding domain OS=Corynebacterium epidermidicanis OX=1050174 GN=CEPID_12125 PE=4 SV=1
MM1 pKa = 7.21EE2 pKa = 5.21KK3 pKa = 9.26WWEE6 pKa = 3.84NCIGLVAAVGDD17 pKa = 4.22LGDD20 pKa = 4.31GGLLFEE26 pKa = 6.49ADD28 pKa = 3.48GQQFEE33 pKa = 4.73IPAGGNEE40 pKa = 3.6MHH42 pKa = 6.7TEE44 pKa = 4.11YY45 pKa = 10.45GAHH48 pKa = 6.79AMTVYY53 pKa = 11.25ADD55 pKa = 3.9LDD57 pKa = 3.8GDD59 pKa = 4.27GVVDD63 pKa = 3.72QVSTLEE69 pKa = 4.05YY70 pKa = 9.74GGSYY74 pKa = 8.99QVFQRR79 pKa = 11.84QDD81 pKa = 2.77GGEE84 pKa = 4.03NLEE87 pKa = 4.4SPANRR92 pKa = 11.84GWGEE96 pKa = 3.84LSDD99 pKa = 3.52ITQEE103 pKa = 4.73RR104 pKa = 11.84GGGDD108 pKa = 3.72ANISAPDD115 pKa = 3.64KK116 pKa = 11.14GGSAPGAVIGAGGWACVEE134 pKa = 4.21WGG136 pKa = 3.48

Molecular weight: 14.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0G3GLN0|A0A0G3GLN0_9CORY Antitoxin protein OS=Corynebacterium epidermidicanis OX=1050174 GN=CEPID_00925 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.72GRR42 pKa = 11.84AKK44 pKa = 9.63LTAA47 pKa = 4.21

Molecular weight: 5.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2448

0

2448

790097

40

3718

322.8

34.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.717 ± 0.064

0.78 ± 0.015

5.644 ± 0.043

6.002 ± 0.056

3.507 ± 0.033

8.155 ± 0.045

2.159 ± 0.024

5.175 ± 0.037

3.411 ± 0.045

9.811 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.251 ± 0.024

2.943 ± 0.032

5.125 ± 0.045

3.517 ± 0.03

5.966 ± 0.057

5.844 ± 0.035

6.139 ± 0.075

8.301 ± 0.051

1.372 ± 0.021

2.184 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski