Puerto Almendras virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Almendravirus; Puerto Almendras almendravirus

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X4R562|X4R562_9RHAB P protein OS=Puerto Almendras virus OX=1479613 GN=P PE=4 SV=1
MM1 pKa = 7.43SRR3 pKa = 11.84NHH5 pKa = 5.87FQKK8 pKa = 10.77LGNKK12 pKa = 9.25PDD14 pKa = 3.59IQADD18 pKa = 3.54IYY20 pKa = 11.62DD21 pKa = 4.12SANLMSQINLNAYY34 pKa = 7.05TISKK38 pKa = 9.95RR39 pKa = 11.84ISEE42 pKa = 4.88DD43 pKa = 3.4YY44 pKa = 10.32QATRR48 pKa = 11.84EE49 pKa = 4.04NEE51 pKa = 4.08EE52 pKa = 3.86IDD54 pKa = 4.22DD55 pKa = 3.74INYY58 pKa = 10.14EE59 pKa = 3.99KK60 pKa = 10.82EE61 pKa = 4.17KK62 pKa = 10.63EE63 pKa = 4.35SKK65 pKa = 10.26EE66 pKa = 3.95LEE68 pKa = 4.23KK69 pKa = 10.68MFTEE73 pKa = 4.59NDD75 pKa = 3.1GDD77 pKa = 4.18TNITPEE83 pKa = 3.7ILQEE87 pKa = 3.95IKK89 pKa = 10.43RR90 pKa = 11.84NHH92 pKa = 6.47HH93 pKa = 6.23LRR95 pKa = 11.84SGTIDD100 pKa = 3.5IIGQSTTSSNRR111 pKa = 11.84PYY113 pKa = 11.4LDD115 pKa = 2.98MGKK118 pKa = 10.07KK119 pKa = 9.54KK120 pKa = 10.78DD121 pKa = 4.01EE122 pKa = 4.53INLTSNDD129 pKa = 4.37CIDD132 pKa = 4.05NLNQKK137 pKa = 10.29LEE139 pKa = 4.14EE140 pKa = 4.92PNTSSSRR147 pKa = 11.84TTKK150 pKa = 10.44FDD152 pKa = 3.05VDD154 pKa = 3.49YY155 pKa = 9.58TAVNRR160 pKa = 11.84NDD162 pKa = 3.36YY163 pKa = 10.16YY164 pKa = 10.79RR165 pKa = 11.84GYY167 pKa = 10.91LKK169 pKa = 10.77ALSDD173 pKa = 3.98VNKK176 pKa = 10.5LLIDD180 pKa = 3.49NSINCKK186 pKa = 9.98FDD188 pKa = 3.48GSHH191 pKa = 6.65SDD193 pKa = 3.17NLKK196 pKa = 10.35IILFAKK202 pKa = 9.12TDD204 pKa = 3.84PEE206 pKa = 3.97ITSPISIEE214 pKa = 4.02RR215 pKa = 11.84QSQSSNKK222 pKa = 8.93TKK224 pKa = 10.37ILQQSTKK231 pKa = 10.4DD232 pKa = 3.27SEE234 pKa = 4.27YY235 pKa = 10.63TIRR238 pKa = 11.84KK239 pKa = 9.41LSDD242 pKa = 3.18QIKK245 pKa = 10.35VITFDD250 pKa = 3.61TPFGEE255 pKa = 4.19PVVIDD260 pKa = 3.44TAKK263 pKa = 10.66LIEE266 pKa = 4.46SASTYY271 pKa = 10.5LDD273 pKa = 3.22SQAAVCQLIEE283 pKa = 4.8LIEE286 pKa = 4.59SNSNEE291 pKa = 4.32SNHH294 pKa = 5.34PTILKK299 pKa = 9.79IISGIPKK306 pKa = 10.12YY307 pKa = 10.67SGLKK311 pKa = 8.22YY312 pKa = 10.33QVDD315 pKa = 3.25RR316 pKa = 11.84KK317 pKa = 10.7YY318 pKa = 10.81RR319 pKa = 11.84VV320 pKa = 2.89

Molecular weight: 36.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X4R286|X4R286_9RHAB Nucleocapsid protein OS=Puerto Almendras virus OX=1479613 GN=N PE=4 SV=1
MM1 pKa = 7.45FKK3 pKa = 10.64NSYY6 pKa = 10.49IMTGDD11 pKa = 3.19YY12 pKa = 10.24SVRR15 pKa = 11.84VFKK18 pKa = 10.49IRR20 pKa = 11.84YY21 pKa = 6.36EE22 pKa = 4.25SSFEE26 pKa = 4.04TLPSDD31 pKa = 4.57SDD33 pKa = 3.42IKK35 pKa = 11.19PMIEE39 pKa = 4.16HH40 pKa = 7.24FDD42 pKa = 3.6GKK44 pKa = 11.0LKK46 pKa = 10.44FLEE49 pKa = 4.3VFTFILNYY57 pKa = 9.63MVTLQIRR64 pKa = 11.84NKK66 pKa = 10.01VKK68 pKa = 9.48TAPTSIFVIKK78 pKa = 10.31FPVDD82 pKa = 3.6SRR84 pKa = 11.84WMFKK88 pKa = 10.49KK89 pKa = 10.22EE90 pKa = 3.81EE91 pKa = 4.28MYY93 pKa = 11.42SMHH96 pKa = 7.06KK97 pKa = 10.39DD98 pKa = 2.68IYY100 pKa = 10.53VEE102 pKa = 4.0NKK104 pKa = 9.62EE105 pKa = 4.0GSHH108 pKa = 6.23RR109 pKa = 11.84LRR111 pKa = 11.84VKK113 pKa = 10.61LVVDD117 pKa = 3.36LHH119 pKa = 7.01VDD121 pKa = 3.04NRR123 pKa = 11.84PRR125 pKa = 11.84DD126 pKa = 3.64RR127 pKa = 11.84LVRR130 pKa = 11.84PVMKK134 pKa = 10.48KK135 pKa = 9.74ILSKK139 pKa = 10.99LYY141 pKa = 8.93DD142 pKa = 3.44TSAEE146 pKa = 3.7RR147 pKa = 11.84KK148 pKa = 8.46MYY150 pKa = 10.57EE151 pKa = 3.53IMKK154 pKa = 10.09EE155 pKa = 4.0NNEE158 pKa = 4.28CC159 pKa = 4.12

Molecular weight: 19.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3522

80

2059

587.0

68.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.612 ± 0.444

1.562 ± 0.407

6.019 ± 0.4

6.019 ± 0.449

4.287 ± 0.445

4.373 ± 0.607

2.129 ± 0.382

9.881 ± 0.514

7.95 ± 0.422

9.256 ± 0.665

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.425

8.092 ± 0.5

3.18 ± 0.332

2.612 ± 0.359

4.798 ± 0.373

7.411 ± 0.828

5.679 ± 0.513

4.969 ± 0.45

1.107 ± 0.205

5.508 ± 0.292
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski