Acinetobacter phage vB_AbaP_PD-6A3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Beijerinckvirinae; Friunavirus; Acinetobacter virus PD6A3

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 48 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S1RTN4|A0A0S1RTN4_9CAUD HNHc domain-containing protein OS=Acinetobacter phage vB_AbaP_PD-6A3 OX=1701807 GN=vBAbaPPD6A3_33 PE=4 SV=1
MM1 pKa = 7.59AGKK4 pKa = 8.42KK5 pKa = 8.41TGASVSRR12 pKa = 11.84LCLLHH17 pKa = 6.83EE18 pKa = 4.88LLVDD22 pKa = 3.61MFIKK26 pKa = 10.58DD27 pKa = 3.27IQDD30 pKa = 4.16AIEE33 pKa = 4.38GDD35 pKa = 4.09YY36 pKa = 11.13PLASADD42 pKa = 3.47KK43 pKa = 9.72NVIVTFLKK51 pKa = 10.85NEE53 pKa = 4.72SITATPDD60 pKa = 3.14ADD62 pKa = 3.57GMEE65 pKa = 4.21KK66 pKa = 10.43LKK68 pKa = 11.23EE69 pKa = 3.97EE70 pKa = 4.39LKK72 pKa = 11.0DD73 pKa = 3.51LSEE76 pKa = 4.13AQRR79 pKa = 11.84AKK81 pKa = 10.74VDD83 pKa = 3.52ALVTQVEE90 pKa = 4.57SGQFDD95 pKa = 4.54DD96 pKa = 5.91LLGPIQQ102 pKa = 3.91

Molecular weight: 11.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S1S026|A0A0S1S026_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaP_PD-6A3 OX=1701807 GN=vBAbaPPD6A3_46 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84GYY4 pKa = 11.14NYY6 pKa = 9.84IAGDD10 pKa = 3.32RR11 pKa = 11.84VYY13 pKa = 10.08RR14 pKa = 11.84TVPNGLIPKK23 pKa = 7.21GTKK26 pKa = 8.67GTVGSCRR33 pKa = 11.84MDD35 pKa = 3.19DD36 pKa = 3.57TVQVQFDD43 pKa = 3.7NGRR46 pKa = 11.84TWYY49 pKa = 10.14CHH51 pKa = 5.67SKK53 pKa = 10.38FIKK56 pKa = 10.0PLVRR60 pKa = 11.84VVGG63 pKa = 3.72

Molecular weight: 7.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

48

0

48

12815

43

1032

267.0

29.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.194 ± 0.437

1.061 ± 0.183

6.391 ± 0.23

5.853 ± 0.267

3.387 ± 0.136

7.327 ± 0.286

2.076 ± 0.178

5.611 ± 0.234

6.883 ± 0.305

8.381 ± 0.286

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.677 ± 0.164

4.901 ± 0.268

3.597 ± 0.152

4.705 ± 0.27

4.791 ± 0.286

5.611 ± 0.264

6.25 ± 0.354

6.773 ± 0.289

1.264 ± 0.094

4.268 ± 0.243
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski