Candidatus Parvarchaeum acidophilus ARMAN-5

Taxonomy: cellular organisms; Archaea; DPANN group; Candidatus Parvarchaeota; Candidatus Parvarchaeum; Candidatus Parvarchaeum acidophilus

Average proteome isoelectric point is 7.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1002 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D6GVX7|D6GVX7_PARA5 Uncharacterized protein OS=Candidatus Parvarchaeum acidophilus ARMAN-5 OX=662762 GN=BJBARM5_0647 PE=4 SV=1
MM1 pKa = 7.92ALMEE5 pKa = 4.65MMAFLNAGILIVAFALLLVVLSFSVSQINSTSVFANSEE43 pKa = 4.03AVATGIGTRR52 pKa = 11.84LITSPNCFAYY62 pKa = 9.8TNTITYY68 pKa = 10.11YY69 pKa = 11.08NSTLDD74 pKa = 3.42ASGGPLYY81 pKa = 10.65SSSYY85 pKa = 9.27TEE87 pKa = 3.94PGVINLNKK95 pKa = 10.01FLEE98 pKa = 4.2NDD100 pKa = 3.71FLSCMQYY107 pKa = 10.42IYY109 pKa = 10.84FGGATDD115 pKa = 5.31LPALQSDD122 pKa = 4.47LAAATGVSLTLTDD135 pKa = 3.66TQDD138 pKa = 3.31PTEE141 pKa = 4.57FGATGSLSLSNYY153 pKa = 8.34NQFNFGASFQQTEE166 pKa = 3.97AKK168 pKa = 9.43IQSFAKK174 pKa = 9.77DD175 pKa = 3.21AQYY178 pKa = 11.81AAMAASLAVSLPIMIATGGAVQFNLILAVGQQSTTEE214 pKa = 3.94IAPQYY219 pKa = 10.45ALANIFYY226 pKa = 10.45SEE228 pKa = 4.05STYY231 pKa = 10.82TEE233 pKa = 4.18SFPVIIQFTNANNQPTFQNSGVLTVDD259 pKa = 3.19ITYY262 pKa = 9.7GIPPYY267 pKa = 10.82SS268 pKa = 3.28

Molecular weight: 28.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D6GUY5|D6GUY5_PARA5 Uncharacterized protein OS=Candidatus Parvarchaeum acidophilus ARMAN-5 OX=662762 GN=BJBARM5_0285 PE=4 SV=1
MM1 pKa = 7.9AEE3 pKa = 4.01RR4 pKa = 11.84SNPVADD10 pKa = 4.13KK11 pKa = 10.71RR12 pKa = 11.84LFYY15 pKa = 10.84NVYY18 pKa = 9.79VCRR21 pKa = 11.84NCNTKK26 pKa = 9.16MRR28 pKa = 11.84ISSQKK33 pKa = 8.79VLRR36 pKa = 11.84NNKK39 pKa = 8.1VRR41 pKa = 11.84CRR43 pKa = 11.84NCGSSALRR51 pKa = 11.84PKK53 pKa = 10.49HH54 pKa = 6.6KK55 pKa = 9.98EE56 pKa = 3.58LRR58 pKa = 11.84KK59 pKa = 10.36LKK61 pKa = 10.44VV62 pKa = 2.93

Molecular weight: 7.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1002

0

1002

265128

30

3776

264.6

29.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.746 ± 0.065

0.768 ± 0.029

5.042 ± 0.087

6.08 ± 0.115

4.825 ± 0.064

6.372 ± 0.083

1.25 ± 0.031

9.305 ± 0.103

8.675 ± 0.165

9.016 ± 0.096

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.33 ± 0.049

6.383 ± 0.111

3.317 ± 0.057

2.259 ± 0.042

3.466 ± 0.086

8.466 ± 0.188

5.211 ± 0.119

6.287 ± 0.059

0.717 ± 0.029

4.485 ± 0.073
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski