Penicillium oxalicum (strain 114-2 / CGMCC 5302) (Penicillium decumbens)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium oxalicum

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9977 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S8BDK4|S8BDK4_PENO1 Uncharacterized protein OS=Penicillium oxalicum (strain 114-2 / CGMCC 5302) OX=933388 GN=PDE_08054 PE=4 SV=1
MM1 pKa = 7.68SYY3 pKa = 11.52YY4 pKa = 10.64NDD6 pKa = 3.44SDD8 pKa = 3.87NEE10 pKa = 4.17RR11 pKa = 11.84GGNQGPDD18 pKa = 2.7SGYY21 pKa = 11.1GGNGSYY27 pKa = 10.74NADD30 pKa = 3.62SNSNQDD36 pKa = 3.67DD37 pKa = 3.79FRR39 pKa = 11.84GSSDD43 pKa = 3.02TSGSDD48 pKa = 3.35GQFRR52 pKa = 11.84NSDD55 pKa = 3.61SYY57 pKa = 11.93GDD59 pKa = 3.46QSGGFGGQNGRR70 pKa = 11.84SDD72 pKa = 3.91NNNNDD77 pKa = 3.61DD78 pKa = 4.06SYY80 pKa = 11.33TNQSSEE86 pKa = 4.07RR87 pKa = 11.84SDD89 pKa = 3.69NYY91 pKa = 10.99GGNSGSNQGGNSGDD105 pKa = 3.53SGFGGLVNQAANYY118 pKa = 8.55LKK120 pKa = 10.5QSSSSNNNGSNNSNSNSADD139 pKa = 3.32NVVDD143 pKa = 3.86SFVDD147 pKa = 3.54KK148 pKa = 11.13QVDD151 pKa = 3.57QYY153 pKa = 11.91APSGSDD159 pKa = 3.06GFVNQGVNNVINNTMNKK176 pKa = 9.68YY177 pKa = 10.09LL178 pKa = 3.96

Molecular weight: 18.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S8ASB0|S8ASB0_PENO1 Uncharacterized protein OS=Penicillium oxalicum (strain 114-2 / CGMCC 5302) OX=933388 GN=PDE_03889 PE=4 SV=1
MM1 pKa = 7.26FCIRR5 pKa = 11.84CRR7 pKa = 11.84ALPSIQSAASATRR20 pKa = 11.84MPTTRR25 pKa = 11.84ISQLTPRR32 pKa = 11.84TLTTPAVSPSARR44 pKa = 11.84FFSSTLLSTPTRR56 pKa = 11.84ALVSNQPLFSRR67 pKa = 11.84APSATTSSLPSIFSLLPPQTRR88 pKa = 11.84AFSATAALGVKK99 pKa = 10.02RR100 pKa = 11.84NTFRR104 pKa = 11.84PSRR107 pKa = 11.84RR108 pKa = 11.84VQKK111 pKa = 10.38RR112 pKa = 11.84RR113 pKa = 11.84SGFLARR119 pKa = 11.84NTSRR123 pKa = 11.84KK124 pKa = 8.62GRR126 pKa = 11.84LVITRR131 pKa = 11.84RR132 pKa = 11.84RR133 pKa = 11.84LKK135 pKa = 10.47GRR137 pKa = 11.84RR138 pKa = 11.84AMSWW142 pKa = 2.72

Molecular weight: 15.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9977

0

9977

4542051

9

7877

455.3

50.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.643 ± 0.019

1.221 ± 0.01

5.603 ± 0.017

6.164 ± 0.024

3.686 ± 0.015

6.742 ± 0.029

2.502 ± 0.011

4.791 ± 0.016

4.549 ± 0.02

8.948 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.23 ± 0.008

3.529 ± 0.012

6.123 ± 0.031

4.152 ± 0.016

6.329 ± 0.024

8.664 ± 0.03

5.894 ± 0.015

6.146 ± 0.017

1.439 ± 0.009

2.644 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski