Procyon lotor papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Lambdapapillomavirus; Lambdapapillomavirus 4

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q4QW04|Q4QW04_9PAPI Protein E6 OS=Procyon lotor papillomavirus 1 OX=312349 GN=E6 PE=3 SV=1
MM1 pKa = 7.68IGQGSSIGDD10 pKa = 3.3IVLTEE15 pKa = 3.98VPEE18 pKa = 5.56AIDD21 pKa = 4.45LYY23 pKa = 10.58CDD25 pKa = 2.95EE26 pKa = 5.42HH27 pKa = 6.48MPSDD31 pKa = 3.67EE32 pKa = 4.28EE33 pKa = 4.33EE34 pKa = 4.4EE35 pKa = 4.21EE36 pKa = 4.28EE37 pKa = 4.62EE38 pKa = 4.13PDD40 pKa = 3.2EE41 pKa = 4.6RR42 pKa = 11.84EE43 pKa = 4.14PFGVTVDD50 pKa = 3.63CGVCKK55 pKa = 10.34RR56 pKa = 11.84RR57 pKa = 11.84VNFVVLSDD65 pKa = 4.03GEE67 pKa = 4.46DD68 pKa = 3.03IRR70 pKa = 11.84RR71 pKa = 11.84LQDD74 pKa = 3.59LLFSLSIVCVSCVEE88 pKa = 4.35SQSFQHH94 pKa = 6.64GGG96 pKa = 3.09

Molecular weight: 10.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q4QW02|Q4QW02_9PAPI Replication protein E1 OS=Procyon lotor papillomavirus 1 OX=312349 GN=E1 PE=3 SV=1
MM1 pKa = 7.25EE2 pKa = 6.23ALRR5 pKa = 11.84QALDD9 pKa = 3.58SVQEE13 pKa = 4.04EE14 pKa = 4.55LLNLYY19 pKa = 10.09EE20 pKa = 5.34KK21 pKa = 10.74DD22 pKa = 3.82SSDD25 pKa = 3.32LTDD28 pKa = 5.71QVTHH32 pKa = 6.14WNLMRR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 3.96QVILHH44 pKa = 5.73YY45 pKa = 10.51ARR47 pKa = 11.84KK48 pKa = 9.16NAITRR53 pKa = 11.84VGMTFVPPQNVSQQKK68 pKa = 9.38AKK70 pKa = 10.5EE71 pKa = 4.22AIEE74 pKa = 3.96QEE76 pKa = 4.82LYY78 pKa = 10.66LQSLLGSDD86 pKa = 4.03YY87 pKa = 11.64SNEE90 pKa = 3.61RR91 pKa = 11.84WTLSDD96 pKa = 3.01TSRR99 pKa = 11.84EE100 pKa = 4.01VLLAPPMYY108 pKa = 9.96CFKK111 pKa = 10.97KK112 pKa = 10.02GGRR115 pKa = 11.84PVDD118 pKa = 3.37VRR120 pKa = 11.84FDD122 pKa = 3.81GDD124 pKa = 3.92PEE126 pKa = 4.46NVTQYY131 pKa = 9.87TLWGHH136 pKa = 7.11IYY138 pKa = 9.3YY139 pKa = 10.69QNAEE143 pKa = 4.48DD144 pKa = 3.59VWQKK148 pKa = 9.81TKK150 pKa = 10.79GHH152 pKa = 6.1VDD154 pKa = 3.36DD155 pKa = 4.45TGLYY159 pKa = 7.81YY160 pKa = 10.12TAEE163 pKa = 4.36GEE165 pKa = 4.0RR166 pKa = 11.84VYY168 pKa = 11.29YY169 pKa = 10.59VVFKK173 pKa = 11.26DD174 pKa = 3.25EE175 pKa = 4.19AKK177 pKa = 10.49RR178 pKa = 11.84YY179 pKa = 6.2GTSGKK184 pKa = 10.55YY185 pKa = 9.04EE186 pKa = 4.04VLHH189 pKa = 6.57EE190 pKa = 4.05LTQPVSTSTSPRR202 pKa = 11.84PTGSTGNSTSLGPQPRR218 pKa = 11.84TSTPRR223 pKa = 11.84KK224 pKa = 9.64KK225 pKa = 9.26ITDD228 pKa = 3.01RR229 pKa = 11.84RR230 pKa = 11.84RR231 pKa = 11.84RR232 pKa = 11.84RR233 pKa = 11.84RR234 pKa = 11.84VASLSKK240 pKa = 8.9PTTVSTRR247 pKa = 11.84GEE249 pKa = 3.87QAPAPGLVAPTPEE262 pKa = 4.06EE263 pKa = 3.76VGRR266 pKa = 11.84SHH268 pKa = 7.51RR269 pKa = 11.84SLGRR273 pKa = 11.84RR274 pKa = 11.84PGTRR278 pKa = 11.84LEE280 pKa = 3.99RR281 pKa = 11.84LVLEE285 pKa = 4.66ARR287 pKa = 11.84DD288 pKa = 3.71PPVVVFKK295 pKa = 11.23GEE297 pKa = 4.15PNSLKK302 pKa = 10.4CLRR305 pKa = 11.84FRR307 pKa = 11.84LRR309 pKa = 11.84KK310 pKa = 9.93GYY312 pKa = 9.73FHH314 pKa = 7.55LFQKK318 pKa = 10.75VSTTWSWTAGQGEE331 pKa = 4.36RR332 pKa = 11.84QGRR335 pKa = 11.84ARR337 pKa = 11.84MLMSFDD343 pKa = 3.83SSEE346 pKa = 3.8QRR348 pKa = 11.84EE349 pKa = 4.5SFLRR353 pKa = 11.84QAPIPRR359 pKa = 11.84SVQCFLGSLDD369 pKa = 4.35DD370 pKa = 4.18LL371 pKa = 4.73

Molecular weight: 42.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2334

96

600

333.4

37.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.955 ± 0.551

2.314 ± 0.709

6.341 ± 0.349

7.112 ± 0.71

4.37 ± 0.398

6.47 ± 0.53

1.842 ± 0.161

4.327 ± 0.774

4.67 ± 0.8

8.912 ± 0.567

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.5 ± 0.279

3.599 ± 1.012

7.027 ± 1.098

3.942 ± 0.381

7.412 ± 0.643

7.841 ± 0.987

5.527 ± 0.578

6.598 ± 0.591

1.414 ± 0.381

2.828 ± 0.39
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski