Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Parvibaculaceae; Parvibaculum; Parvibaculum lavamentivorans

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3580 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>sp|A7HTA7|Y1521_PARL1 UPF0178 protein Plav_1521 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=Plav_1521 PE=3 SV=1
MM1 pKa = 6.53TTRR4 pKa = 11.84HH5 pKa = 6.0SKK7 pKa = 10.87NITGTTGAIDD17 pKa = 3.58SSLLGSAYY25 pKa = 10.15SYY27 pKa = 11.25YY28 pKa = 10.94GGVVQTAHH36 pKa = 6.75SSGKK40 pKa = 7.27TASGVKK46 pKa = 9.76RR47 pKa = 11.84VFAAAMLSGASVLAVGIAGTGNAAAGTCVGPINEE81 pKa = 4.91TYY83 pKa = 9.52TCAGTFDD90 pKa = 3.9DD91 pKa = 4.81TIEE94 pKa = 4.24YY95 pKa = 10.57DD96 pKa = 3.56SGVDD100 pKa = 4.48DD101 pKa = 3.77VTLVLGPGSFIDD113 pKa = 3.62TTEE116 pKa = 3.86NTSEE120 pKa = 4.43HH121 pKa = 6.49DD122 pKa = 3.46HH123 pKa = 7.11DD124 pKa = 3.99NAGIVVVGEE133 pKa = 3.82SDD135 pKa = 3.34MAIVNNGSIFTGDD148 pKa = 2.73NTTWVEE154 pKa = 3.59TDD156 pKa = 3.15EE157 pKa = 4.59EE158 pKa = 4.44YY159 pKa = 10.99GYY161 pKa = 10.88YY162 pKa = 10.42AYY164 pKa = 10.88LGDD167 pKa = 3.89GHH169 pKa = 8.13HH170 pKa = 7.29GIAAYY175 pKa = 10.68SNWDD179 pKa = 3.45DD180 pKa = 3.74AAVEE184 pKa = 4.06NTAFGTIVTTSSEE197 pKa = 4.21SHH199 pKa = 5.85GMVAEE204 pKa = 4.1ALEE207 pKa = 4.94GSASADD213 pKa = 3.29NAGLIGTSGEE223 pKa = 4.13DD224 pKa = 3.1SHH226 pKa = 7.73GISATAKK233 pKa = 8.98YY234 pKa = 10.52SVDD237 pKa = 3.37VVNSGTITTDD247 pKa = 2.61GTYY250 pKa = 10.75SHH252 pKa = 7.26GIWAALDD259 pKa = 3.4SEE261 pKa = 4.52YY262 pKa = 10.93GYY264 pKa = 11.47GSFGGIIEE272 pKa = 4.34ISNSGSIEE280 pKa = 4.02TSGEE284 pKa = 4.13SASGISANAEE294 pKa = 3.89EE295 pKa = 5.1GDD297 pKa = 3.93VEE299 pKa = 4.31IANSGSIVTEE309 pKa = 3.78GDD311 pKa = 3.05EE312 pKa = 4.93ALGIWAHH319 pKa = 6.44GDD321 pKa = 3.43DD322 pKa = 3.74VDD324 pKa = 5.16VVNTADD330 pKa = 3.89GSIVTYY336 pKa = 10.26GADD339 pKa = 2.93AHH341 pKa = 6.06GVYY344 pKa = 10.3IFGDD348 pKa = 3.87TVSLSNAGTIEE359 pKa = 4.23TYY361 pKa = 10.98GEE363 pKa = 3.92DD364 pKa = 3.02AHH366 pKa = 8.29AVVAYY371 pKa = 10.3SGGIDD376 pKa = 3.14TTTIVNTGLIQATGEE391 pKa = 3.82EE392 pKa = 4.17ADD394 pKa = 4.7AIRR397 pKa = 11.84ASGPTVRR404 pKa = 11.84ITNDD408 pKa = 3.01VIEE411 pKa = 4.51EE412 pKa = 4.12DD413 pKa = 4.35EE414 pKa = 4.32EE415 pKa = 4.57VVDD418 pKa = 3.78YY419 pKa = 11.18GVIRR423 pKa = 11.84SEE425 pKa = 4.34DD426 pKa = 3.2GAAIHH431 pKa = 5.6VTEE434 pKa = 5.22ADD436 pKa = 4.07DD437 pKa = 4.5ARR439 pKa = 11.84LYY441 pKa = 11.41NNGAIYY447 pKa = 10.58GNVSIEE453 pKa = 3.94TDD455 pKa = 3.2EE456 pKa = 4.04YY457 pKa = 11.09GYY459 pKa = 11.42AVNTGSISSDD469 pKa = 3.56RR470 pKa = 11.84KK471 pKa = 8.89WKK473 pKa = 10.26AALAIDD479 pKa = 4.14AEE481 pKa = 4.41EE482 pKa = 5.05GDD484 pKa = 4.02VVVVNDD490 pKa = 4.19GDD492 pKa = 3.89IEE494 pKa = 4.4ASGRR498 pKa = 11.84KK499 pKa = 9.17AKK501 pKa = 10.35GVEE504 pKa = 3.84LEE506 pKa = 4.76GYY508 pKa = 10.32DD509 pKa = 3.51VTLTNTGSIEE519 pKa = 4.0TWGSDD524 pKa = 2.74GHH526 pKa = 7.82AVDD529 pKa = 5.38LEE531 pKa = 4.05GDD533 pKa = 3.67EE534 pKa = 4.91EE535 pKa = 4.52YY536 pKa = 11.63GEE538 pKa = 4.31VTLNNSGLIQASGEE552 pKa = 3.9EE553 pKa = 4.04ADD555 pKa = 3.81AVRR558 pKa = 11.84ASGEE562 pKa = 4.23TVRR565 pKa = 11.84ITNQAVLVPGEE576 pKa = 3.91TDD578 pKa = 3.64AYY580 pKa = 9.93DD581 pKa = 3.35TTIYY585 pKa = 10.69GIIRR589 pKa = 11.84SEE591 pKa = 4.17DD592 pKa = 3.16GAAIRR597 pKa = 11.84VDD599 pKa = 3.64EE600 pKa = 4.44SDD602 pKa = 3.18VVYY605 pKa = 10.79VVNDD609 pKa = 3.17GFIYY613 pKa = 10.72SNISIEE619 pKa = 4.33ADD621 pKa = 3.19DD622 pKa = 3.81YY623 pKa = 11.83AYY625 pKa = 11.1VSNAGSVSSDD635 pKa = 3.44RR636 pKa = 11.84RR637 pKa = 11.84WKK639 pKa = 10.41AAVSADD645 pKa = 3.67VEE647 pKa = 4.39EE648 pKa = 4.96GNAVIVNDD656 pKa = 4.22GEE658 pKa = 4.49IVTTASRR665 pKa = 11.84AAGIEE670 pKa = 3.9VDD672 pKa = 4.03VEE674 pKa = 4.07LGDD677 pKa = 4.07AYY679 pKa = 11.11VVNSGTITTGSLEE692 pKa = 4.04EE693 pKa = 4.61GEE695 pKa = 4.81PEE697 pKa = 4.56GGWRR701 pKa = 11.84SHH703 pKa = 6.74GIDD706 pKa = 3.44VFAEE710 pKa = 4.03DD711 pKa = 3.99TVLVLNTGDD720 pKa = 3.33VTTYY724 pKa = 8.85GHH726 pKa = 6.64KK727 pKa = 10.74AKK729 pKa = 10.61GIRR732 pKa = 11.84IEE734 pKa = 4.3TQEE737 pKa = 3.74GTAAGVNSGTIDD749 pKa = 2.92TWGEE753 pKa = 3.86DD754 pKa = 3.42STGLIVTATSRR765 pKa = 11.84EE766 pKa = 4.23HH767 pKa = 6.32YY768 pKa = 10.29DD769 pKa = 3.27GYY771 pKa = 11.28SYY773 pKa = 11.57FDD775 pKa = 3.12ISGIALAGNIGSVEE789 pKa = 4.07TRR791 pKa = 11.84GDD793 pKa = 3.4DD794 pKa = 3.36AMGVVAVAEE803 pKa = 4.64GNFAAALNVLGGSISTSGDD822 pKa = 3.37DD823 pKa = 3.37AHH825 pKa = 7.63GLVAVSGFEE834 pKa = 4.15SVEE837 pKa = 3.99DD838 pKa = 3.65ALEE841 pKa = 4.2GSEE844 pKa = 3.97YY845 pKa = 10.98SEE847 pKa = 4.64GGEE850 pKa = 3.92GSYY853 pKa = 10.9AIAVNGLPPQLLAGFSGIGTEE874 pKa = 4.1MGSGVLGEE882 pKa = 4.29IADD885 pKa = 4.14VLAEE889 pKa = 4.15ALPEE893 pKa = 4.27GEE895 pKa = 4.55YY896 pKa = 11.11DD897 pKa = 3.58PADD900 pKa = 3.62FRR902 pKa = 11.84STIVTTGDD910 pKa = 3.18GAIGVLAVSSNGGAVAGNLYY930 pKa = 10.48GDD932 pKa = 3.81VVTGVLHH939 pKa = 6.16EE940 pKa = 4.66EE941 pKa = 5.26GYY943 pKa = 10.78SVGGDD948 pKa = 3.28HH949 pKa = 7.46AYY951 pKa = 10.22GVAAMSVDD959 pKa = 3.42EE960 pKa = 4.88GGAIAFNAYY969 pKa = 9.23NASIVTNGAYY979 pKa = 10.18AHH981 pKa = 6.65GLLAISEE988 pKa = 5.08DD989 pKa = 3.8GDD991 pKa = 3.56AMAMNKK997 pKa = 9.37YY998 pKa = 10.26ASSIVTNGLGAVGIRR1013 pKa = 11.84VWTDD1017 pKa = 3.27GEE1019 pKa = 4.07SDD1021 pKa = 3.85EE1022 pKa = 4.87YY1023 pKa = 11.61SSADD1027 pKa = 3.28ALVWNVGSSVTTYY1040 pKa = 10.72GQGAQGIVAFSEE1052 pKa = 4.17EE1053 pKa = 4.25GDD1055 pKa = 3.72VTVANAPMTIGEE1067 pKa = 4.55GEE1069 pKa = 4.33DD1070 pKa = 3.53EE1071 pKa = 4.97EE1072 pKa = 4.65ILAGLIEE1079 pKa = 4.29THH1081 pKa = 6.64GDD1083 pKa = 3.28EE1084 pKa = 5.88ADD1086 pKa = 4.67GIWASGEE1093 pKa = 4.06SDD1095 pKa = 3.04VDD1097 pKa = 4.07VYY1099 pKa = 11.82NSGSIITHH1107 pKa = 5.56GEE1109 pKa = 3.83GANGISASGDD1119 pKa = 3.3EE1120 pKa = 4.07VDD1122 pKa = 4.55IDD1124 pKa = 3.81NSGTIQTSGDD1134 pKa = 3.37EE1135 pKa = 4.16AFGVDD1140 pKa = 3.36MRR1142 pKa = 11.84GWSVSLDD1149 pKa = 3.4NSGTISTSGKK1159 pKa = 8.38YY1160 pKa = 9.2AHH1162 pKa = 6.92AVVGDD1167 pKa = 4.17SYY1169 pKa = 12.15SDD1171 pKa = 3.46LTTTVYY1177 pKa = 11.08NSGTIEE1183 pKa = 4.04ATGKK1187 pKa = 9.1YY1188 pKa = 9.47ANAVRR1193 pKa = 11.84VSGPTVHH1200 pKa = 5.76VTNTEE1205 pKa = 4.02DD1206 pKa = 3.71GVISSGDD1213 pKa = 3.28VAIYY1217 pKa = 10.62AFEE1220 pKa = 4.08TKK1222 pKa = 9.91YY1223 pKa = 11.42ASIANHH1229 pKa = 6.26GEE1231 pKa = 4.17VEE1233 pKa = 4.29GSIHH1237 pKa = 6.13VSAYY1241 pKa = 10.32DD1242 pKa = 3.73YY1243 pKa = 11.55EE1244 pKa = 5.65DD1245 pKa = 3.57FASTYY1250 pKa = 9.94IVNTGSVSGDD1260 pKa = 2.56IDD1262 pKa = 3.76TSFGEE1267 pKa = 4.08SDD1269 pKa = 4.95DD1270 pKa = 4.46IIIVDD1275 pKa = 4.08GGTVGGAIFTGDD1287 pKa = 3.59GEE1289 pKa = 4.79DD1290 pKa = 3.49EE1291 pKa = 4.3VTISGTGVSIAKK1303 pKa = 9.79GIHH1306 pKa = 6.21GDD1308 pKa = 3.88GEE1310 pKa = 4.65GDD1312 pKa = 3.4LHH1314 pKa = 8.15VLFEE1318 pKa = 4.31QDD1320 pKa = 3.25DD1321 pKa = 4.39TVTFSDD1327 pKa = 4.85GIEE1330 pKa = 4.63GYY1332 pKa = 10.5AISNAHH1338 pKa = 5.75FVGFSSGTTVFDD1350 pKa = 3.58GVNIHH1355 pKa = 5.67TEE1357 pKa = 3.72EE1358 pKa = 5.47GEE1360 pKa = 4.07ILVGEE1365 pKa = 4.59DD1366 pKa = 2.86ATLATTIEE1374 pKa = 4.14NAFAFADD1381 pKa = 3.87EE1382 pKa = 4.34TSVLGRR1388 pKa = 11.84LKK1390 pKa = 10.7VVAGSSFGFSGDD1402 pKa = 3.55VVFDD1406 pKa = 3.57EE1407 pKa = 5.38GGTFEE1412 pKa = 4.77TGLTGDD1418 pKa = 3.63GAGVVTGDD1426 pKa = 3.51TVRR1429 pKa = 11.84FASGSTIHH1437 pKa = 6.48VDD1439 pKa = 3.02AGAGFTEE1446 pKa = 4.79TVGSDD1451 pKa = 3.24FLIASSEE1458 pKa = 4.33SEE1460 pKa = 4.44SGVTDD1465 pKa = 4.24DD1466 pKa = 5.08GASVTDD1472 pKa = 3.58NLILFKK1478 pKa = 10.45FLKK1481 pKa = 10.28VMNGDD1486 pKa = 3.76VVSEE1490 pKa = 4.41GAADD1494 pKa = 3.78EE1495 pKa = 4.3LFLRR1499 pKa = 11.84IEE1501 pKa = 4.19VEE1503 pKa = 3.93EE1504 pKa = 4.18TAFDD1508 pKa = 4.78LEE1510 pKa = 4.63TEE1512 pKa = 4.3AKK1514 pKa = 9.14GTGNLLSVASALDD1527 pKa = 3.82VYY1529 pKa = 11.07IEE1531 pKa = 4.21TQPLDD1536 pKa = 3.78NPLVQYY1542 pKa = 10.64LLQFEE1547 pKa = 4.66TEE1549 pKa = 4.26EE1550 pKa = 4.07EE1551 pKa = 3.88QLAALLKK1558 pKa = 10.11VIKK1561 pKa = 9.66DD1562 pKa = 3.85TVPDD1566 pKa = 3.87EE1567 pKa = 4.83SNASAGATIASTDD1580 pKa = 4.46LIYY1583 pKa = 11.38DD1584 pKa = 4.05MIMDD1588 pKa = 4.84RR1589 pKa = 11.84LSGGGFVVADD1599 pKa = 3.89GGMTGLSAGDD1609 pKa = 3.56AVLGGDD1615 pKa = 4.74GNWALWGRR1623 pKa = 11.84VGGSKK1628 pKa = 10.76ASFTPSGVNGFDD1640 pKa = 3.4ADD1642 pKa = 3.37SWGVSLGLDD1651 pKa = 3.67GEE1653 pKa = 4.61VAPALRR1659 pKa = 11.84LGFGGFYY1666 pKa = 10.04IASDD1670 pKa = 3.82VEE1672 pKa = 4.49EE1673 pKa = 4.65NGAGANSTNDD1683 pKa = 2.81IAGYY1687 pKa = 10.9GFTTYY1692 pKa = 10.15MSWRR1696 pKa = 11.84PGAWYY1701 pKa = 10.9VNGALGYY1708 pKa = 11.3GMNTYY1713 pKa = 10.96DD1714 pKa = 4.89SRR1716 pKa = 11.84RR1717 pKa = 11.84TSLGSVNTADD1727 pKa = 3.56YY1728 pKa = 11.38DD1729 pKa = 3.72GTQFVARR1736 pKa = 11.84AEE1738 pKa = 4.03AGYY1741 pKa = 9.13MIVSGQWDD1749 pKa = 3.78LTPNVGLRR1757 pKa = 11.84YY1758 pKa = 10.03NRR1760 pKa = 11.84VDD1762 pKa = 2.89IDD1764 pKa = 4.21GYY1766 pKa = 11.54AEE1768 pKa = 4.27TGPLPISVNSQTVDD1782 pKa = 2.8SLRR1785 pKa = 11.84AVAGVNARR1793 pKa = 11.84YY1794 pKa = 7.84TMPLDD1799 pKa = 3.96GGGKK1803 pKa = 10.15LIPEE1807 pKa = 4.88FGVKK1811 pKa = 10.33LLGEE1815 pKa = 4.28LADD1818 pKa = 4.25PDD1820 pKa = 4.16GAITGQIVGGGVFVTQTTPRR1840 pKa = 11.84DD1841 pKa = 4.18DD1842 pKa = 3.04ISYY1845 pKa = 10.78GVGTGITYY1853 pKa = 7.98EE1854 pKa = 4.2ASDD1857 pKa = 3.62KK1858 pKa = 10.85FSIRR1862 pKa = 11.84VTYY1865 pKa = 10.53DD1866 pKa = 3.04GEE1868 pKa = 4.22FQSDD1872 pKa = 3.63YY1873 pKa = 11.63DD1874 pKa = 4.05EE1875 pKa = 4.6QALSAAIRR1883 pKa = 11.84WAFF1886 pKa = 3.13

Molecular weight:
193.79 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A7HPY6|A7HPY6_PARL1 Copper-resistance protein CopA family OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=Plav_0346 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.58GFRR19 pKa = 11.84ARR21 pKa = 11.84TQTVGGRR28 pKa = 11.84KK29 pKa = 8.9VLAARR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.53GRR39 pKa = 11.84KK40 pKa = 8.77RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight:
5.15 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3580

0

3580

1152854

29

3325

322.0

35.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.31 ± 0.058

0.811 ± 0.012

5.651 ± 0.031

6.518 ± 0.038

3.815 ± 0.027

8.689 ± 0.039

2.057 ± 0.018

5.15 ± 0.032

3.625 ± 0.035

9.87 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.594 ± 0.019

2.636 ± 0.023

5.112 ± 0.03

2.808 ± 0.022

7.026 ± 0.041

5.249 ± 0.032

5.167 ± 0.038

7.189 ± 0.032

1.353 ± 0.018

2.372 ± 0.022

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski