Shewanella phage SppYZU01

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 49 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V0DYH6|A0A1V0DYH6_9CAUD Uncharacterized protein OS=Shewanella phage SppYZU01 OX=1965372 GN=SppYZU01_22 PE=4 SV=1
MM1 pKa = 8.03AEE3 pKa = 3.61QCTNEE8 pKa = 4.41DD9 pKa = 3.51RR10 pKa = 11.84FNCKK14 pKa = 9.33YY15 pKa = 10.09CSKK18 pKa = 11.09AGVTCDD24 pKa = 3.67GAPGDD29 pKa = 4.03TSGTPPTGPRR39 pKa = 11.84VCVRR43 pKa = 11.84EE44 pKa = 4.22KK45 pKa = 9.15YY46 pKa = 8.96TEE48 pKa = 3.91AAGTYY53 pKa = 9.38IGEE56 pKa = 4.35KK57 pKa = 10.06EE58 pKa = 4.18LYY60 pKa = 10.32DD61 pKa = 3.73YY62 pKa = 11.09VLKK65 pKa = 10.52EE66 pKa = 3.88WEE68 pKa = 4.2FLYY71 pKa = 11.04SDD73 pKa = 4.02GTTEE77 pKa = 4.2TVTSRR82 pKa = 11.84EE83 pKa = 3.9RR84 pKa = 11.84VEE86 pKa = 3.89

Molecular weight: 9.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V0DYK1|A0A1V0DYK1_9CAUD Uncharacterized protein OS=Shewanella phage SppYZU01 OX=1965372 GN=SppYZU01_31 PE=4 SV=1
MM1 pKa = 7.1TRR3 pKa = 11.84INVVPVEE10 pKa = 4.04EE11 pKa = 4.61LTNKK15 pKa = 10.02HH16 pKa = 5.88LFAEE20 pKa = 4.43YY21 pKa = 10.38RR22 pKa = 11.84EE23 pKa = 4.52LPRR26 pKa = 11.84AMRR29 pKa = 11.84RR30 pKa = 11.84AVLATYY36 pKa = 10.41KK37 pKa = 10.34SRR39 pKa = 11.84RR40 pKa = 11.84PSDD43 pKa = 3.21IKK45 pKa = 10.56IAPAYY50 pKa = 10.56LLGTGHH56 pKa = 6.87EE57 pKa = 4.55LFFIDD62 pKa = 3.75KK63 pKa = 10.18CAWLYY68 pKa = 10.99SRR70 pKa = 11.84WLQLRR75 pKa = 11.84NEE77 pKa = 4.23LVARR81 pKa = 11.84GYY83 pKa = 11.17NLGEE87 pKa = 3.87QFQTIVRR94 pKa = 11.84SRR96 pKa = 11.84ARR98 pKa = 11.84FIRR101 pKa = 11.84RR102 pKa = 11.84HH103 pKa = 4.93GSQFYY108 pKa = 10.9GSYY111 pKa = 10.53QPTADD116 pKa = 3.21AAIINRR122 pKa = 11.84QRR124 pKa = 11.84IQEE127 pKa = 4.13RR128 pKa = 11.84LTT130 pKa = 3.35

Molecular weight: 15.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

49

0

49

13579

59

876

277.1

30.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.415 ± 0.481

1.105 ± 0.155

6.289 ± 0.262

6.267 ± 0.269

3.402 ± 0.151

8.44 ± 0.235

1.458 ± 0.197

5.162 ± 0.218

5.126 ± 0.396

7.615 ± 0.238

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.797 ± 0.191

4.05 ± 0.197

4.986 ± 0.367

3.69 ± 0.214

6.009 ± 0.29

5.354 ± 0.25

6.127 ± 0.301

7.327 ± 0.256

1.407 ± 0.139

2.975 ± 0.257
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski