Areca palm velarivirus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Velarivirus

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0G2UK88|A0A0G2UK88_9CLOS p18 protein OS=Areca palm velarivirus 1 OX=1654603 PE=4 SV=1
MM1 pKa = 7.2LTTMEE6 pKa = 4.87EE7 pKa = 3.93LVDD10 pKa = 3.42WMKK13 pKa = 11.07SFEE16 pKa = 3.83ISYY19 pKa = 10.41EE20 pKa = 3.99VFDD23 pKa = 4.2MGEE26 pKa = 3.98GSDD29 pKa = 4.01FIIVLSAFDD38 pKa = 4.36DD39 pKa = 4.04GRR41 pKa = 11.84EE42 pKa = 4.09KK43 pKa = 10.16IVYY46 pKa = 8.45MSNNKK51 pKa = 9.23YY52 pKa = 10.62FSFKK56 pKa = 10.41KK57 pKa = 9.92IIYY60 pKa = 9.17VRR62 pKa = 11.84LPYY65 pKa = 10.21LYY67 pKa = 10.47SIFHH71 pKa = 7.4RR72 pKa = 11.84YY73 pKa = 8.18LQVAPFYY80 pKa = 10.8HH81 pKa = 6.75RR82 pKa = 11.84EE83 pKa = 3.79WVNNPEE89 pKa = 4.69SITVRR94 pKa = 11.84WPEE97 pKa = 3.75KK98 pKa = 9.89QAVLEE103 pKa = 4.75LLDD106 pKa = 4.06EE107 pKa = 4.38LQIHH111 pKa = 5.96YY112 pKa = 9.29EE113 pKa = 3.82RR114 pKa = 11.84SGPSNGKK121 pKa = 9.79NILVLVRR128 pKa = 11.84RR129 pKa = 11.84TVDD132 pKa = 2.95GFEE135 pKa = 4.44TINYY139 pKa = 9.2LSNNSNFDD147 pKa = 2.89FDD149 pKa = 4.4LFIRR153 pKa = 11.84VDD155 pKa = 3.03ISEE158 pKa = 4.1QHH160 pKa = 5.66SLIDD164 pKa = 3.29IFLPSLPFHH173 pKa = 6.13KK174 pKa = 10.75CEE176 pKa = 3.99WLL178 pKa = 3.61

Molecular weight: 21.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0G2UG82|A0A0G2UG82_9CLOS RNA-dependent RNA polymerase (Fragment) OS=Areca palm velarivirus 1 OX=1654603 PE=4 SV=1
MM1 pKa = 7.54EE2 pKa = 6.4KK3 pKa = 10.01ILISIFEE10 pKa = 4.39CALMSDD16 pKa = 3.42AVTIYY21 pKa = 8.88RR22 pKa = 11.84TNRR25 pKa = 11.84SFLYY29 pKa = 10.58NNYY32 pKa = 9.64SQLSPVLLSKK42 pKa = 11.23ANLIRR47 pKa = 11.84YY48 pKa = 8.03FYY50 pKa = 10.93GQDD53 pKa = 2.71AVAAIQAGLLAVRR66 pKa = 11.84RR67 pKa = 11.84HH68 pKa = 5.24SRR70 pKa = 11.84HH71 pKa = 5.87LPSDD75 pKa = 3.31LRR77 pKa = 11.84ISLFSIILPDD87 pKa = 4.3FNQKK91 pKa = 9.31ILEE94 pKa = 4.13FLKK97 pKa = 11.3VMDD100 pKa = 4.17QFLDD104 pKa = 4.0TYY106 pKa = 10.65HH107 pKa = 7.56KK108 pKa = 10.72LILIQLEE115 pKa = 4.05IVIAEE120 pKa = 4.4TKK122 pKa = 9.68AQRR125 pKa = 11.84NYY127 pKa = 11.16DD128 pKa = 3.6SGSNRR133 pKa = 11.84IYY135 pKa = 11.14GRR137 pKa = 11.84IFGYY141 pKa = 9.99SLNKK145 pKa = 9.91GGSILKK151 pKa = 9.69IWISFIAKK159 pKa = 9.72SALAEE164 pKa = 4.11QKK166 pKa = 11.0SLII169 pKa = 4.17

Molecular weight: 19.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11

0

11

5284

36

2049

480.4

55.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.637 ± 0.562

1.911 ± 0.295

5.829 ± 0.33

4.939 ± 0.414

6.037 ± 0.473

3.671 ± 0.509

2.101 ± 0.142

8.081 ± 0.577

6.737 ± 0.321

10.522 ± 0.745

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.684 ± 0.204

6.586 ± 0.284

3.785 ± 0.369

3.653 ± 0.44

4.542 ± 0.274

7.702 ± 0.34

6.245 ± 0.541

6.132 ± 0.42

0.814 ± 0.135

4.391 ± 0.299
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski