Sulfolobales virus YNP1

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 71 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N9P9W2|A0A0N9P9W2_9VIRU Uncharacterized protein OS=Sulfolobales virus YNP1 OX=1732179 PE=4 SV=1
MM1 pKa = 7.76KK2 pKa = 10.5LLLLLAPFLASLLAMGITGGAVLDD26 pKa = 4.08WSDD29 pKa = 3.29GSAVVTIQPLSEE41 pKa = 4.11TVIDD45 pKa = 4.57GYY47 pKa = 10.52VVNAFYY53 pKa = 10.86NGSNQVVLLAEE64 pKa = 5.17PYY66 pKa = 10.07YY67 pKa = 10.45QGQNLQQVTFSLYY80 pKa = 10.49DD81 pKa = 3.42YY82 pKa = 7.88YY83 pKa = 11.0THH85 pKa = 6.67QLIGNYY91 pKa = 8.83TIEE94 pKa = 4.34DD95 pKa = 4.18NYY97 pKa = 11.11TVVTVPSNITVIFIYY112 pKa = 10.49FDD114 pKa = 3.46SQQFGPFYY122 pKa = 10.45VTTNGGNYY130 pKa = 9.74APPSLEE136 pKa = 3.65QMLMYY141 pKa = 9.27VIPLSSVALFGLRR154 pKa = 11.84AGLRR158 pKa = 11.84NVGLGLIVSSVFTTAEE174 pKa = 3.98MVALGVSNPWLYY186 pKa = 10.85AIPTLEE192 pKa = 3.97IMFAVILLWHH202 pKa = 6.4SVQTSGG208 pKa = 5.15

Molecular weight: 22.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N9NK95|A0A0N9NK95_9VIRU Uncharacterized protein OS=Sulfolobales virus YNP1 OX=1732179 PE=4 SV=1
MM1 pKa = 7.72AYY3 pKa = 9.57KK4 pKa = 10.25EE5 pKa = 4.1HH6 pKa = 5.88THH8 pKa = 6.76AKK10 pKa = 7.04LTEE13 pKa = 3.72WRR15 pKa = 11.84RR16 pKa = 11.84EE17 pKa = 3.73FAEE20 pKa = 4.13AARR23 pKa = 11.84MCSAKK28 pKa = 10.65VKK30 pKa = 10.26GLPKK34 pKa = 10.39GEE36 pKa = 4.07KK37 pKa = 9.38LRR39 pKa = 11.84AYY41 pKa = 8.19RR42 pKa = 11.84ACMRR46 pKa = 11.84EE47 pKa = 4.03TLKK50 pKa = 10.88KK51 pKa = 10.3RR52 pKa = 3.37

Molecular weight: 6.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

71

0

71

11985

46

1101

168.8

19.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.14 ± 0.336

0.609 ± 0.133

4.556 ± 0.333

7.267 ± 0.49

4.214 ± 0.359

5.148 ± 0.286

1.093 ± 0.117

8.185 ± 0.304

7.593 ± 0.524

9.704 ± 0.341

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.128 ± 0.178

5.373 ± 0.346

4.631 ± 0.438

4.097 ± 1.045

4.122 ± 0.312

6.508 ± 0.523

5.29 ± 0.213

7.626 ± 0.408

1.001 ± 0.132

4.948 ± 0.421
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski