Parvimonas micra

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Tissierellia; Tissierellales; Peptoniphilaceae; Parvimonas

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1418 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4S2J3|A0A0B4S2J3_9FIRM Methyltransferase OS=Parvimonas micra OX=33033 GN=NW74_04620 PE=4 SV=1
MM1 pKa = 7.73EE2 pKa = 4.99EE3 pKa = 4.47NKK5 pKa = 10.74GCGCGCGCEE14 pKa = 4.01EE15 pKa = 4.2EE16 pKa = 4.76MEE18 pKa = 4.66AEE20 pKa = 4.08LLVFEE25 pKa = 5.09NEE27 pKa = 4.23DD28 pKa = 3.44GKK30 pKa = 11.48EE31 pKa = 3.83EE32 pKa = 4.05TFEE35 pKa = 4.23VIGVFEE41 pKa = 4.4VEE43 pKa = 4.1EE44 pKa = 4.24KK45 pKa = 10.76EE46 pKa = 4.36YY47 pKa = 10.61IALQSQEE54 pKa = 4.48DD55 pKa = 4.41GSILLCKK62 pKa = 10.45YY63 pKa = 10.01IEE65 pKa = 4.47KK66 pKa = 10.34EE67 pKa = 3.78DD68 pKa = 4.01GEE70 pKa = 4.61FEE72 pKa = 4.24VEE74 pKa = 4.19EE75 pKa = 5.09IEE77 pKa = 5.48DD78 pKa = 3.76DD79 pKa = 3.96EE80 pKa = 4.73EE81 pKa = 4.38FEE83 pKa = 4.37KK84 pKa = 11.46VSDD87 pKa = 3.77AFDD90 pKa = 3.95ALVEE94 pKa = 4.31EE95 pKa = 5.28DD96 pKa = 5.4DD97 pKa = 4.05EE98 pKa = 4.61

Molecular weight: 11.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4RZK2|A0A0B4RZK2_9FIRM Membrane protein insertase YidC OS=Parvimonas micra OX=33033 GN=yidC PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.21QPNRR9 pKa = 11.84RR10 pKa = 11.84KK11 pKa = 9.79RR12 pKa = 11.84SKK14 pKa = 9.53IHH16 pKa = 5.79GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.24AGRR28 pKa = 11.84AVLKK32 pKa = 10.4RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.17NRR39 pKa = 11.84KK40 pKa = 8.78VLSAA44 pKa = 4.17

Molecular weight: 5.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1418

0

1418

449836

37

3043

317.2

36.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.951 ± 0.068

1.063 ± 0.021

5.683 ± 0.053

7.784 ± 0.081

5.323 ± 0.068

6.046 ± 0.06

1.218 ± 0.022

9.851 ± 0.081

9.889 ± 0.087

9.223 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.473 ± 0.033

6.363 ± 0.056

2.49 ± 0.028

1.974 ± 0.028

3.344 ± 0.044

6.377 ± 0.048

4.682 ± 0.052

6.543 ± 0.059

0.594 ± 0.02

4.13 ± 0.049
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski