Southern bean mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus

Average proteome isoelectric point is 7.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q7T5V6|Q7T5V6_9VIRU Capsid protein OS=Southern bean mosaic virus OX=12139 PE=3 SV=1
MM1 pKa = 6.78YY2 pKa = 10.23HH3 pKa = 7.46PGRR6 pKa = 11.84SPSFLITLANVICAAILYY24 pKa = 7.55DD25 pKa = 3.43IRR27 pKa = 11.84MGGYY31 pKa = 9.36QPGSLVPIVAWMTPFVTLLWLSASFVTYY59 pKa = 9.74LYY61 pKa = 10.18RR62 pKa = 11.84YY63 pKa = 9.65ARR65 pKa = 11.84TRR67 pKa = 11.84LLPEE71 pKa = 3.85EE72 pKa = 4.09KK73 pKa = 10.13VARR76 pKa = 11.84VYY78 pKa = 9.3YY79 pKa = 8.64TAQSAPYY86 pKa = 8.85FDD88 pKa = 4.77PALGVMMQFAPSHH101 pKa = 6.09GGASIEE107 pKa = 4.27VQVNPSWISLLGGSLKK123 pKa = 10.69INGDD127 pKa = 3.65DD128 pKa = 4.16ASNEE132 pKa = 4.26SAVLGSFYY140 pKa = 11.12SSVKK144 pKa = 10.53PGDD147 pKa = 3.72EE148 pKa = 4.01PASLVAIKK156 pKa = 10.46SGPQTIGFGCRR167 pKa = 11.84TKK169 pKa = 10.47IDD171 pKa = 3.73GDD173 pKa = 3.9DD174 pKa = 4.1CLFTDD179 pKa = 3.15NHH181 pKa = 5.66VWNNSMRR188 pKa = 11.84PTALAKK194 pKa = 10.35AGKK197 pKa = 9.23QVAIEE202 pKa = 4.41DD203 pKa = 3.64WDD205 pKa = 4.24TPLSCDD211 pKa = 3.38HH212 pKa = 6.88KK213 pKa = 10.2MLDD216 pKa = 3.71FVVVRR221 pKa = 11.84VPKK224 pKa = 10.45HH225 pKa = 4.37VWSKK229 pKa = 11.12LGVKK233 pKa = 8.63ATQLVCPSDD242 pKa = 3.81KK243 pKa = 11.17DD244 pKa = 4.1AVTCYY249 pKa = 10.25GGSSSDD255 pKa = 3.6SLLSGTGVCSKK266 pKa = 10.96VDD268 pKa = 3.98FSWKK272 pKa = 8.5LTHH275 pKa = 6.57SCPTAAGWSGTPIYY289 pKa = 10.37SSRR292 pKa = 11.84GVVGMHH298 pKa = 6.33VGFEE302 pKa = 4.97DD303 pKa = 3.14IGKK306 pKa = 9.97LNRR309 pKa = 11.84GVNAFYY315 pKa = 10.97VSNYY319 pKa = 9.68LLRR322 pKa = 11.84SQEE325 pKa = 4.16TLPPDD330 pKa = 3.8LSVIEE335 pKa = 4.5IPFEE339 pKa = 4.26DD340 pKa = 4.14VEE342 pKa = 4.42TRR344 pKa = 11.84SYY346 pKa = 11.47EE347 pKa = 4.17FIEE350 pKa = 4.21VEE352 pKa = 3.54IKK354 pKa = 10.94GRR356 pKa = 11.84GKK358 pKa = 10.49AKK360 pKa = 9.95LGKK363 pKa = 9.86RR364 pKa = 11.84EE365 pKa = 3.99FAWIPEE371 pKa = 4.18SGKK374 pKa = 10.41YY375 pKa = 8.02WADD378 pKa = 3.92DD379 pKa = 4.49DD380 pKa = 5.96DD381 pKa = 6.55DD382 pKa = 5.06SLPPPPKK389 pKa = 10.4VVDD392 pKa = 4.12GKK394 pKa = 9.1MVWTSAQEE402 pKa = 4.18TVAEE406 pKa = 4.27PLNLPEE412 pKa = 4.49GGRR415 pKa = 11.84VKK417 pKa = 10.81ALAALSQLAGYY428 pKa = 8.62NFKK431 pKa = 10.68EE432 pKa = 4.49GEE434 pKa = 4.1AASTRR439 pKa = 11.84GMPLRR444 pKa = 11.84FVGQSACKK452 pKa = 9.92FRR454 pKa = 11.84EE455 pKa = 4.33LCRR458 pKa = 11.84KK459 pKa = 7.66DD460 pKa = 3.48TPDD463 pKa = 2.98EE464 pKa = 3.98VLRR467 pKa = 11.84ATRR470 pKa = 11.84VFPEE474 pKa = 4.61LSDD477 pKa = 3.9FSWPEE482 pKa = 3.65RR483 pKa = 11.84GSKK486 pKa = 10.82AEE488 pKa = 3.92LHH490 pKa = 6.42SLLLQAGKK498 pKa = 10.22FNPTAIPRR506 pKa = 11.84NLEE509 pKa = 3.9GACQNLLEE517 pKa = 5.14RR518 pKa = 11.84YY519 pKa = 7.28PASKK523 pKa = 10.08SCYY526 pKa = 8.82CLRR529 pKa = 11.84GEE531 pKa = 4.39AWSFDD536 pKa = 3.22AVYY539 pKa = 11.09EE540 pKa = 4.32EE541 pKa = 4.65VCKK544 pKa = 10.41KK545 pKa = 10.59AQSAEE550 pKa = 4.12INEE553 pKa = 4.4KK554 pKa = 10.57ASPGVPLSRR563 pKa = 11.84LASTNKK569 pKa = 10.22DD570 pKa = 3.04LLKK573 pKa = 10.72RR574 pKa = 11.84HH575 pKa = 6.36LEE577 pKa = 3.98LVALCVTEE585 pKa = 5.02RR586 pKa = 11.84LFLLSEE592 pKa = 4.9AEE594 pKa = 4.09DD595 pKa = 3.73LHH597 pKa = 6.74NKK599 pKa = 10.05SPVDD603 pKa = 3.8LVQMGLCDD611 pKa = 3.77PVRR614 pKa = 11.84LFVKK618 pKa = 10.09QEE620 pKa = 3.55PHH622 pKa = 6.66ASRR625 pKa = 11.84KK626 pKa = 8.72VKK628 pKa = 10.06EE629 pKa = 3.96GRR631 pKa = 11.84FRR633 pKa = 11.84LISSVSLVDD642 pKa = 3.53QLVEE646 pKa = 4.17RR647 pKa = 11.84MLFGPQNQLEE657 pKa = 4.27IAEE660 pKa = 4.39WEE662 pKa = 4.59HH663 pKa = 7.05IPSKK667 pKa = 10.61PGMGLSLQRR676 pKa = 11.84QAKK679 pKa = 10.16SLFDD683 pKa = 4.03DD684 pKa = 4.2LRR686 pKa = 11.84VKK688 pKa = 10.81HH689 pKa = 5.85SRR691 pKa = 11.84CPAAEE696 pKa = 3.96ADD698 pKa = 3.14ISGFDD703 pKa = 3.43WSVQDD708 pKa = 3.34WEE710 pKa = 4.28LWADD714 pKa = 3.34VEE716 pKa = 4.29MRR718 pKa = 11.84IVLGGFGQKK727 pKa = 10.49LSIAARR733 pKa = 11.84NRR735 pKa = 11.84FSCFMNSVFQLSDD748 pKa = 3.05GTLIEE753 pKa = 4.06QQLPGIMKK761 pKa = 10.12SGSYY765 pKa = 8.61CTSSTNSRR773 pKa = 11.84IRR775 pKa = 11.84CLMAEE780 pKa = 4.85LIGSPWCIAMGDD792 pKa = 3.8DD793 pKa = 5.11SVEE796 pKa = 4.01GWVDD800 pKa = 3.51GAKK803 pKa = 10.31DD804 pKa = 2.83KK805 pKa = 11.33YY806 pKa = 9.83MRR808 pKa = 11.84LGHH811 pKa = 5.36TCKK814 pKa = 10.33DD815 pKa = 3.75YY816 pKa = 11.17KK817 pKa = 10.73PCATSISGRR826 pKa = 11.84LYY828 pKa = 9.38EE829 pKa = 5.04VEE831 pKa = 4.31FCSHH835 pKa = 7.24VIRR838 pKa = 11.84EE839 pKa = 4.21DD840 pKa = 3.82RR841 pKa = 11.84CWLASWPKK849 pKa = 9.39TLYY852 pKa = 10.46KK853 pKa = 10.46YY854 pKa = 10.66LSEE857 pKa = 4.23GKK859 pKa = 9.12WFFEE863 pKa = 4.14DD864 pKa = 4.39LEE866 pKa = 5.46RR867 pKa = 11.84EE868 pKa = 4.45LGSSPHH874 pKa = 6.03WPRR877 pKa = 11.84IRR879 pKa = 11.84HH880 pKa = 4.43YY881 pKa = 11.18VVGNTPSPDD890 pKa = 2.95KK891 pKa = 10.92TRR893 pKa = 11.84LEE895 pKa = 4.23NSSPSYY901 pKa = 11.07GEE903 pKa = 4.2EE904 pKa = 3.8ADD906 pKa = 3.77KK907 pKa = 8.87TTVSQGYY914 pKa = 8.23SEE916 pKa = 5.34HH917 pKa = 6.7SGSPGHH923 pKa = 6.54SIEE926 pKa = 4.28EE927 pKa = 4.08AQEE930 pKa = 4.07PEE932 pKa = 4.2TAPFCCKK939 pKa = 10.07AASVYY944 pKa = 10.02PGWGIHH950 pKa = 6.47GPYY953 pKa = 10.04CSGGYY958 pKa = 10.45GSLTT962 pKa = 3.36

Molecular weight: 106.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q7T5V7|Q7T5V7_9VIRU Putative movement protein OS=Southern bean mosaic virus OX=12139 PE=4 SV=1
MM1 pKa = 7.87AKK3 pKa = 10.33RR4 pKa = 11.84LTKK7 pKa = 10.22QQLAKK12 pKa = 10.68AIANTLEE19 pKa = 4.14APATQSRR26 pKa = 11.84RR27 pKa = 11.84PRR29 pKa = 11.84NRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84SAARR39 pKa = 11.84QPQSIQAGASMAPIAQGAMVRR60 pKa = 11.84LRR62 pKa = 11.84EE63 pKa = 4.0PSLRR67 pKa = 11.84TAGGVTVLTHH77 pKa = 6.43SEE79 pKa = 4.22LSTEE83 pKa = 4.12LAVTNAIVVSSEE95 pKa = 3.45LVMPFTMGTWLRR107 pKa = 11.84GVAANWSKK115 pKa = 11.55YY116 pKa = 7.81SLFSVRR122 pKa = 11.84YY123 pKa = 7.48TYY125 pKa = 10.98LPSCPSTTSGSIHH138 pKa = 6.61MGFQYY143 pKa = 11.56DD144 pKa = 3.61MADD147 pKa = 3.6TLPVSVNQLSNLRR160 pKa = 11.84GYY162 pKa = 11.09VSGQVWSGSSGLCYY176 pKa = 10.29INGTRR181 pKa = 11.84CSDD184 pKa = 3.37TANAITTTLDD194 pKa = 3.15VAKK197 pKa = 10.16LGKK200 pKa = 9.39KK201 pKa = 8.78WYY203 pKa = 8.93PFKK206 pKa = 10.78TSTDD210 pKa = 3.48FTAAVGVIVNIATPLVPARR229 pKa = 11.84LVIAMLDD236 pKa = 3.92GSSSTAVSTGRR247 pKa = 11.84LYY249 pKa = 11.25VSYY252 pKa = 9.06TVQLIEE258 pKa = 4.15PTALALNNN266 pKa = 3.79

Molecular weight: 28.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1946

147

962

486.5

53.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.4 ± 1.052

2.518 ± 0.461

4.573 ± 0.692

5.653 ± 0.951

3.649 ± 0.9

7.297 ± 0.438

1.85 ± 0.609

4.111 ± 0.524

5.293 ± 0.776

8.941 ± 0.544

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.953 ± 0.325

2.826 ± 0.372

6.526 ± 1.038

3.34 ± 0.293

5.396 ± 0.683

10.175 ± 0.823

5.55 ± 1.284

7.554 ± 0.608

2.107 ± 0.283

3.289 ± 0.057
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski