Bordetella virus LK3

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vojvodinavirus; unclassified Vojvodinavirus

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 79 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D0W900|A0A2D0W900_9CAUD Putative structural protein OS=Bordetella virus LK3 OX=1926943 GN=LK3_22 PE=4 SV=1
MM1 pKa = 7.47TPMDD5 pKa = 5.03PEE7 pKa = 4.24NLPPPIATLGPDD19 pKa = 3.0VTFYY23 pKa = 11.54DD24 pKa = 4.63DD25 pKa = 4.11GDD27 pKa = 3.83VTEE30 pKa = 4.81GLTYY34 pKa = 9.98YY35 pKa = 10.72YY36 pKa = 10.51RR37 pKa = 11.84VGAFNAVRR45 pKa = 11.84EE46 pKa = 4.5VVSEE50 pKa = 4.0EE51 pKa = 4.24LEE53 pKa = 4.37APADD57 pKa = 3.81PNAPQARR64 pKa = 11.84LIWRR68 pKa = 11.84ILIQDD73 pKa = 3.72TRR75 pKa = 11.84SGDD78 pKa = 5.05DD79 pKa = 3.36FACWVSQIQMRR90 pKa = 11.84VLGGPNLAVGGSAYY104 pKa = 10.42ASSFYY109 pKa = 10.14STPEE113 pKa = 3.27DD114 pKa = 3.44WGPGRR119 pKa = 11.84AFDD122 pKa = 4.59GSAATGWSCDD132 pKa = 3.14RR133 pKa = 11.84DD134 pKa = 3.58APLPQWIAYY143 pKa = 7.34EE144 pKa = 4.13LTSPAALTEE153 pKa = 3.9ISIQAGNNAGRR164 pKa = 11.84AARR167 pKa = 11.84APRR170 pKa = 11.84TFQIQSSTDD179 pKa = 3.12GTIWEE184 pKa = 4.51TRR186 pKa = 11.84FTATDD191 pKa = 3.63EE192 pKa = 4.42PAWDD196 pKa = 3.94PGEE199 pKa = 3.8IRR201 pKa = 11.84TYY203 pKa = 11.5AFF205 pKa = 3.72

Molecular weight: 22.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D0W8Y0|A0A2D0W8Y0_9CAUD Putative terminase large subunit OS=Bordetella virus LK3 OX=1926943 GN=LK3_02 PE=4 SV=1
MM1 pKa = 7.38RR2 pKa = 11.84TLILILAVLPLLATQAHH19 pKa = 6.36AEE21 pKa = 4.06EE22 pKa = 4.49ARR24 pKa = 11.84PYY26 pKa = 10.13SAQEE30 pKa = 3.92TIRR33 pKa = 11.84RR34 pKa = 11.84AQIGTHH40 pKa = 5.44SPRR43 pKa = 11.84LAPPVRR49 pKa = 11.84VAPAPARR56 pKa = 11.84TARR59 pKa = 11.84PSRR62 pKa = 11.84YY63 pKa = 9.43DD64 pKa = 3.38RR65 pKa = 11.84LVCRR69 pKa = 11.84VDD71 pKa = 3.28PAKK74 pKa = 10.2PLHH77 pKa = 5.28QQIICEE83 pKa = 4.1KK84 pKa = 10.3QKK86 pKa = 11.27

Molecular weight: 9.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

79

0

79

18649

37

939

236.1

26.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.719 ± 0.473

1.013 ± 0.109

6.086 ± 0.208

7.083 ± 0.234

3.561 ± 0.145

7.877 ± 0.201

1.759 ± 0.159

4.51 ± 0.158

4.274 ± 0.284

8.826 ± 0.272

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.14 ± 0.126

3.507 ± 0.153

5.309 ± 0.227

4.048 ± 0.155

7.121 ± 0.281

4.713 ± 0.255

5.507 ± 0.253

6.853 ± 0.27

1.936 ± 0.139

2.815 ± 0.169
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski