Rusa timorensis papillomavirus type 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; unclassified Papillomaviridae; non-primate mammal papillomaviruses

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2R2Z1A7|A0A2R2Z1A7_9PAPI Major capsid protein L1 OS=Rusa timorensis papillomavirus type 2 OX=1905556 GN=L1 PE=3 SV=1
MM1 pKa = 7.25FVFLSVCVVTLIMATVNRR19 pKa = 11.84RR20 pKa = 11.84KK21 pKa = 9.87RR22 pKa = 11.84ASDD25 pKa = 2.84WDD27 pKa = 3.87LYY29 pKa = 9.78RR30 pKa = 11.84ACRR33 pKa = 11.84GGADD37 pKa = 4.17CISDD41 pKa = 3.59VVNKK45 pKa = 10.35YY46 pKa = 6.97EE47 pKa = 4.71HH48 pKa = 6.65KK49 pKa = 9.43TPADD53 pKa = 3.16KK54 pKa = 10.92VLQYY58 pKa = 11.11GGAGVFLGGLGIGTGSGALGVRR80 pKa = 11.84PGVTGPAEE88 pKa = 4.63EE89 pKa = 4.69IPLVTLGEE97 pKa = 4.29RR98 pKa = 11.84TTITDD103 pKa = 3.47TGSGRR108 pKa = 11.84TPSLGSTSFGGTSRR122 pKa = 11.84FGSGFGGRR130 pKa = 11.84IDD132 pKa = 5.37LISAGRR138 pKa = 11.84GRR140 pKa = 11.84VTTSDD145 pKa = 3.3VSVNTVDD152 pKa = 3.67SVTPSVILPEE162 pKa = 4.31TVPADD167 pKa = 3.63PGIEE171 pKa = 3.9LQVFTDD177 pKa = 3.78VEE179 pKa = 4.56DD180 pKa = 3.94SVQVTVSSSVDD191 pKa = 3.23EE192 pKa = 4.86GEE194 pKa = 4.39VAVLEE199 pKa = 4.68VPATEE204 pKa = 4.3SFGRR208 pKa = 11.84PSQVTTRR215 pKa = 11.84GGGGKK220 pKa = 8.06VHH222 pKa = 7.25HH223 pKa = 6.86SRR225 pKa = 11.84HH226 pKa = 4.92VVPAEE231 pKa = 3.67TGTILGEE238 pKa = 4.05TSEE241 pKa = 4.32TQNIFIEE248 pKa = 4.87GSGVGDD254 pKa = 3.87SYY256 pKa = 11.86SEE258 pKa = 4.63SIEE261 pKa = 3.73LWTYY265 pKa = 10.08SRR267 pKa = 11.84PRR269 pKa = 11.84YY270 pKa = 7.31STPDD274 pKa = 2.98SEE276 pKa = 4.71PPVNRR281 pKa = 11.84RR282 pKa = 11.84GINNPFSKK290 pKa = 9.95RR291 pKa = 11.84YY292 pKa = 8.0YY293 pKa = 9.57KK294 pKa = 10.3QVTVEE299 pKa = 4.61DD300 pKa = 4.29PQFLTEE306 pKa = 3.97PQKK309 pKa = 10.92LVSNVFEE316 pKa = 4.5NPAFVDD322 pKa = 4.48DD323 pKa = 4.74VDD325 pKa = 5.37DD326 pKa = 5.62SIPFLDD332 pKa = 4.11TDD334 pKa = 3.55TRR336 pKa = 11.84PYY338 pKa = 9.27NTEE341 pKa = 3.75SDD343 pKa = 3.73FLDD346 pKa = 3.22IGRR349 pKa = 11.84LGRR352 pKa = 11.84VQYY355 pKa = 9.37TVSPGEE361 pKa = 3.84GLGVSRR367 pKa = 11.84IGTRR371 pKa = 11.84FTIKK375 pKa = 9.26TRR377 pKa = 11.84SGVTIGEE384 pKa = 4.35QVHH387 pKa = 5.04YY388 pKa = 9.6RR389 pKa = 11.84YY390 pKa = 9.31PLSPITGASEE400 pKa = 5.24DD401 pKa = 3.88IEE403 pKa = 4.3LQNLVTGMSEE413 pKa = 4.38GVLDD417 pKa = 4.04SLNDD421 pKa = 3.9TVVEE425 pKa = 4.14TLNNAMLEE433 pKa = 4.32SVDD436 pKa = 5.33LDD438 pKa = 4.77DD439 pKa = 5.92ISDD442 pKa = 3.96FLSVSSSVLEE452 pKa = 4.02NEE454 pKa = 4.92LMDD457 pKa = 3.93NVEE460 pKa = 5.53DD461 pKa = 3.57ITFGQLAFRR470 pKa = 11.84DD471 pKa = 3.76EE472 pKa = 4.74GEE474 pKa = 4.57TEE476 pKa = 4.15VFTYY480 pKa = 10.37PDD482 pKa = 3.28YY483 pKa = 11.9SNTQKK488 pKa = 11.22AGVTVISEE496 pKa = 4.49DD497 pKa = 3.4NVTGTKK503 pKa = 10.28SGDD506 pKa = 3.53VVNEE510 pKa = 3.93TTINTHH516 pKa = 6.24GNDD519 pKa = 3.2SLIDD523 pKa = 3.53VLVIDD528 pKa = 5.61DD529 pKa = 3.99YY530 pKa = 12.06NFYY533 pKa = 10.85LSYY536 pKa = 10.62YY537 pKa = 8.61LHH539 pKa = 7.28PANFPKK545 pKa = 10.52KK546 pKa = 9.79KK547 pKa = 9.77RR548 pKa = 11.84RR549 pKa = 11.84KK550 pKa = 8.06LWYY553 pKa = 8.57MM554 pKa = 3.99

Molecular weight: 60.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2R2Z1A9|A0A2R2Z1A9_9PAPI Regulatory protein E2 OS=Rusa timorensis papillomavirus type 2 OX=1905556 GN=E2 PE=3 SV=1
MM1 pKa = 7.0VAGPATTKK9 pKa = 10.5CLPKK13 pKa = 10.7DD14 pKa = 3.45KK15 pKa = 10.94GLGAITLTLKK25 pKa = 10.29PLPGGDD31 pKa = 3.97GVDD34 pKa = 3.62IAQKK38 pKa = 10.48APPAAQPGLKK48 pKa = 10.08NFCQLHH54 pKa = 5.8HH55 pKa = 6.86KK56 pKa = 8.49WRR58 pKa = 11.84PASNLAIQRR67 pKa = 11.84IPFADD72 pKa = 3.55LTVKK76 pKa = 10.46NYY78 pKa = 9.0YY79 pKa = 9.76VRR81 pKa = 11.84SCCPLCGQSLNYY93 pKa = 9.67CVHH96 pKa = 5.95TNKK99 pKa = 10.01TGIFSFEE106 pKa = 4.03QLLSSCFSLVCPGCAEE122 pKa = 4.12SS123 pKa = 4.31

Molecular weight: 13.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2183

123

586

436.6

48.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.413 ± 0.954

2.749 ± 0.733

6.093 ± 0.481

5.772 ± 0.52

4.169 ± 0.603

7.467 ± 0.956

1.787 ± 0.183

4.26 ± 0.616

5.36 ± 0.783

8.383 ± 0.423

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.878 ± 0.415

4.627 ± 0.263

5.589 ± 0.649

4.031 ± 0.499

5.314 ± 0.303

7.696 ± 0.717

7.1 ± 0.861

6.505 ± 1.337

1.42 ± 0.29

3.39 ± 0.16
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski