Torque teno mini virus 5

Taxonomy: Viruses; Anelloviridae; Betatorquevirus

Average proteome isoelectric point is 7.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9DUB5|Q9DUB5_9VIRU Uncharacterized protein OS=Torque teno mini virus 5 OX=687373 PE=4 SV=1
MM1 pKa = 7.32SSCYY5 pKa = 10.23KK6 pKa = 8.0PTYY9 pKa = 10.37YY10 pKa = 9.03NTKK13 pKa = 9.93GKK15 pKa = 7.37QTQWINDD22 pKa = 3.22IHH24 pKa = 6.18CTHH27 pKa = 7.23DD28 pKa = 3.63LWCSCDD34 pKa = 3.52HH35 pKa = 5.86VLKK38 pKa = 10.89HH39 pKa = 6.22LLLSIAEE46 pKa = 4.05RR47 pKa = 11.84NEE49 pKa = 3.91KK50 pKa = 10.15IEE52 pKa = 3.94LTKK55 pKa = 10.79EE56 pKa = 3.74EE57 pKa = 4.5KK58 pKa = 10.57KK59 pKa = 10.38QVLQCLTTTEE69 pKa = 4.82EE70 pKa = 3.94ITTQNGDD77 pKa = 4.01DD78 pKa = 4.21GDD80 pKa = 4.27LDD82 pKa = 4.86EE83 pKa = 6.54IGLDD87 pKa = 3.53AIFAEE92 pKa = 4.91EE93 pKa = 4.1LTEE96 pKa = 4.73DD97 pKa = 3.68AGG99 pKa = 4.0

Molecular weight: 11.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9DUB4|Q9DUB4_9VIRU Capsid protein OS=Torque teno mini virus 5 OX=687373 PE=3 SV=1
MM1 pKa = 7.47LKK3 pKa = 9.9ILPTRR8 pKa = 11.84ISFLYY13 pKa = 9.54PVTSMKK19 pKa = 9.83QLRR22 pKa = 11.84YY23 pKa = 9.1RR24 pKa = 11.84VQGQPPKK31 pKa = 10.73ASYY34 pKa = 8.46THH36 pKa = 6.45LTSDD40 pKa = 4.89MEE42 pKa = 4.43TTQQKK47 pKa = 10.34LLQEE51 pKa = 4.3LQRR54 pKa = 11.84TGQLKK59 pKa = 10.63KK60 pKa = 10.97LFLKK64 pKa = 10.32LQNQSQQNYY73 pKa = 8.34SNKK76 pKa = 9.19CSSFSKK82 pKa = 9.49HH83 pKa = 3.97QKK85 pKa = 8.48KK86 pKa = 9.58RR87 pKa = 11.84RR88 pKa = 11.84RR89 pKa = 11.84KK90 pKa = 8.33KK91 pKa = 10.29KK92 pKa = 9.81KK93 pKa = 9.54RR94 pKa = 11.84CTSTSNSSDD103 pKa = 3.14NSSSSTEE110 pKa = 4.04SEE112 pKa = 4.06

Molecular weight: 13.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

882

99

671

294.0

34.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.494 ± 0.433

1.701 ± 0.788

4.082 ± 0.968

5.782 ± 1.025

4.762 ± 1.352

3.628 ± 0.491

2.494 ± 0.299

5.669 ± 1.097

8.05 ± 1.713

7.256 ± 1.76

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.927 ± 0.215

6.122 ± 0.89

6.122 ± 1.766

8.277 ± 0.902

5.102 ± 0.798

7.029 ± 2.577

8.957 ± 0.492

2.041 ± 0.084

2.381 ± 0.811

6.122 ± 1.348
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski