Collimonas fungivorans (strain Ter331)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas; Collimonas fungivorans

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4429 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|G0AGS4|G0AGS4_COLFT Lipoprotein putative OS=Collimonas fungivorans (strain Ter331) OX=1005048 GN=CFU_1855 PE=4 SV=1
MM1 pKa = 7.87TDD3 pKa = 2.78THH5 pKa = 6.7TPSQMPFDD13 pKa = 4.78AGQLQKK19 pKa = 10.45IRR21 pKa = 11.84TLLKK25 pKa = 10.31QQGLLDD31 pKa = 4.22ANGKK35 pKa = 9.36VVDD38 pKa = 4.07TLATFGNSPPKK49 pKa = 10.53GAFAPIYY56 pKa = 10.72AEE58 pKa = 3.5ISKK61 pKa = 10.29IISAVGSTVDD71 pKa = 4.3PKK73 pKa = 9.95IQYY76 pKa = 8.01WFSKK80 pKa = 10.58AADD83 pKa = 3.54INNDD87 pKa = 3.35VTSDD91 pKa = 3.62PADD94 pKa = 3.88DD95 pKa = 4.35YY96 pKa = 11.72IRR98 pKa = 11.84GVTQYY103 pKa = 11.07GLAMRR108 pKa = 11.84HH109 pKa = 5.9KK110 pKa = 10.86LDD112 pKa = 4.24GLSQSAIDD120 pKa = 4.51IGLQQTSNLIGEE132 pKa = 4.3NVINEE137 pKa = 3.91ILGDD141 pKa = 3.68GGIPDD146 pKa = 4.71FGYY149 pKa = 9.81MISGDD154 pKa = 3.03ISAAIGNDD162 pKa = 2.9ALGRR166 pKa = 11.84FQQDD170 pKa = 2.43AGGWGGSFYY179 pKa = 11.21YY180 pKa = 10.15WNAPLNYY187 pKa = 8.05GTTLPVISVGNVIANGGTVLTNGAAVTYY215 pKa = 9.23PSSLKK220 pKa = 10.14EE221 pKa = 3.55FYY223 pKa = 10.09YY224 pKa = 11.22ANSNASADD232 pKa = 3.65FAIPEE237 pKa = 4.15ISTVAASSSVGGILGTLITQGGLPNFPKK265 pKa = 10.45AVNDD269 pKa = 3.04AWVAVLSGSQAQTPIMVKK287 pKa = 10.58AKK289 pKa = 10.47LFADD293 pKa = 4.66TIEE296 pKa = 4.05VLIGRR301 pKa = 11.84FLTGNFVPGPHH312 pKa = 6.03STGQPTILVSNNAVTTTYY330 pKa = 10.89SNNGIITQNFGSSGNDD346 pKa = 2.85SLQWQNAAGVIGNVSIDD363 pKa = 3.13ASGAIRR369 pKa = 11.84IDD371 pKa = 3.45ANNATEE377 pKa = 4.09VAVIDD382 pKa = 3.53SDD384 pKa = 4.61SRR386 pKa = 11.84IDD388 pKa = 3.66YY389 pKa = 10.58VKK391 pKa = 10.92GSGARR396 pKa = 11.84IVGSSGDD403 pKa = 3.35QDD405 pKa = 3.68TLYY408 pKa = 11.14GGVGSSTYY416 pKa = 10.87VLQTLTTGIKK426 pKa = 9.38DD427 pKa = 3.85TIDD430 pKa = 3.87DD431 pKa = 3.77QDD433 pKa = 4.08GLGSLYY439 pKa = 10.92VGSNLINGKK448 pKa = 9.12GAQTGQQANSWSDD461 pKa = 3.55ANGTLYY467 pKa = 10.74QFVPLSADD475 pKa = 3.4AQIGTMLISGGNFIGPGQIAINDD498 pKa = 3.65FDD500 pKa = 4.43LGKK503 pKa = 10.58AVTDD507 pKa = 3.98ANGDD511 pKa = 3.89LGIHH515 pKa = 6.84LSQEE519 pKa = 3.65IGLTADD525 pKa = 3.26TSEE528 pKa = 4.47TNLFANGMPANQKK541 pKa = 10.83ADD543 pKa = 3.43VALGNSQTFTVHH555 pKa = 7.11ALADD559 pKa = 3.54STAAQTIQLALSGGGSYY576 pKa = 11.05ALSTGATQTAFNGKK590 pKa = 9.47ISVTIAAGQDD600 pKa = 3.1SATFSLIDD608 pKa = 4.65LSNTNQADD616 pKa = 3.94APTLTATYY624 pKa = 9.26TDD626 pKa = 3.58TNGTVTSNTLAITFDD641 pKa = 4.0HH642 pKa = 7.12PAADD646 pKa = 4.19PSTPPTVVGTVSTAPVSIDD665 pKa = 2.98GSKK668 pKa = 10.94YY669 pKa = 10.72NYY671 pKa = 10.0TEE673 pKa = 3.91FNGDD677 pKa = 3.49GLVTGNSGGNGILTGDD693 pKa = 3.96GNSVINGSGALDD705 pKa = 3.7VIIAGNGNNQIYY717 pKa = 10.9ANVQTDD723 pKa = 3.4VATALTQAKK732 pKa = 9.32AAQASGKK739 pKa = 10.15RR740 pKa = 11.84GDD742 pKa = 4.76LISVGNGNNTIVGGNGNDD760 pKa = 3.36AVFTGSGNNTLILGSGAVTVTGGVIVHH787 pKa = 6.07SPISGEE793 pKa = 4.47GVANWASSTEE803 pKa = 3.85FSSDD807 pKa = 2.98VGAEE811 pKa = 4.09TTDD814 pKa = 2.73TGGIVRR820 pKa = 11.84DD821 pKa = 3.65STGFNAPNPYY831 pKa = 8.04YY832 pKa = 11.03ANYY835 pKa = 10.17ISDD838 pKa = 3.94TPVGIGNDD846 pKa = 3.93TIFGGTGNSVYY857 pKa = 10.89YY858 pKa = 10.65LSNGNNYY865 pKa = 9.98LDD867 pKa = 4.19AGGGNDD873 pKa = 4.62FIGAGVGNNTIFGGIGNDD891 pKa = 3.88TIRR894 pKa = 11.84GAGGNNYY901 pKa = 9.42INAEE905 pKa = 4.15SGNDD909 pKa = 3.93LIAAYY914 pKa = 9.8GGNNTIVGGTGNDD927 pKa = 3.89TIFSGDD933 pKa = 3.41NTSNWASSITTEE945 pKa = 3.73NNYY948 pKa = 10.09INGGSGKK955 pKa = 10.07SVIYY959 pKa = 10.21GAGGNDD965 pKa = 3.53TLIGGTGNVTIYY977 pKa = 10.96GGDD980 pKa = 3.39GTEE983 pKa = 5.26DD984 pKa = 2.93ITGGSGHH991 pKa = 7.04DD992 pKa = 3.45VLYY995 pKa = 10.74GGSGTDD1001 pKa = 3.53VIHH1004 pKa = 7.05AGDD1007 pKa = 4.26GGTADD1012 pKa = 3.88SATSIYY1018 pKa = 10.56AGSGNTTIYY1027 pKa = 10.82GGGGTDD1033 pKa = 3.41VIYY1036 pKa = 10.51GSSGTEE1042 pKa = 3.48VIYY1045 pKa = 11.05AGDD1048 pKa = 3.92GGNATAATQIHH1059 pKa = 6.76AGNGNVTVYY1068 pKa = 10.91GGLGTDD1074 pKa = 3.98QIAGGSGTDD1083 pKa = 3.16VLYY1086 pKa = 11.05AGDD1089 pKa = 4.71GGTADD1094 pKa = 3.7GPTTVFAGTGSDD1106 pKa = 3.29TLYY1109 pKa = 11.1GGAGVDD1115 pKa = 4.92ILDD1118 pKa = 3.86ATNGNNVLLVAGSGDD1133 pKa = 3.39ATLLGGSGDD1142 pKa = 3.8DD1143 pKa = 3.56TLIAGGGTDD1152 pKa = 3.89KK1153 pKa = 11.3LVGGAGNNAYY1163 pKa = 10.06VFNAGFGQAEE1173 pKa = 4.21ISSTSGSDD1181 pKa = 3.43VIQFGAGISASDD1193 pKa = 3.72LTVTAALAADD1203 pKa = 4.25GSGVLEE1209 pKa = 4.1IEE1211 pKa = 4.33GAGTILVDD1219 pKa = 3.75SGLSSAVSAVNFADD1233 pKa = 4.14GTSLTIAQLIAQTGAQSEE1251 pKa = 4.82TIAGATGNILFSTGAGDD1268 pKa = 3.97SVQGGSGNDD1277 pKa = 3.48TLSAWGGKK1285 pKa = 7.94ATLTAGSGNNVLYY1298 pKa = 10.87AGGGNDD1304 pKa = 4.54LLVGAAGNDD1313 pKa = 3.64TLIAGAGNDD1322 pKa = 3.78TLISGTGADD1331 pKa = 3.53TLVSNSSGTTFVVNNVQDD1349 pKa = 4.46VIQLPSSQNQNDD1361 pKa = 4.51TIVSSVDD1368 pKa = 3.27YY1369 pKa = 9.98VLPDD1373 pKa = 5.14AITTLTLTGSANLAGTGNTWNSVITGNAGNDD1404 pKa = 2.84ILTAVSGEE1412 pKa = 4.12TTLIAGAGTDD1422 pKa = 3.68TMIGSAGDD1430 pKa = 3.41TVFVVNSLNDD1440 pKa = 3.4VLVEE1444 pKa = 4.01QAVHH1448 pKa = 5.93GTATVQTNLSYY1459 pKa = 10.74TLASNFDD1466 pKa = 3.75NLILTGSANLVGTGNDD1482 pKa = 3.89LNNQLTANGGNDD1494 pKa = 3.4TLIAGGGNDD1503 pKa = 3.67TLLGGSGNDD1512 pKa = 3.16RR1513 pKa = 11.84LIAGSGNDD1521 pKa = 3.95SLNGGAGIDD1530 pKa = 3.64TLVAGSGNDD1539 pKa = 3.26VMSAQTGSTYY1549 pKa = 10.86VFNQGFGQTEE1559 pKa = 4.44IYY1561 pKa = 10.01NAAGSTLQFGAGIAPSDD1578 pKa = 3.72LTLSLTLYY1586 pKa = 10.69GNTPSIILTDD1596 pKa = 3.76SAGGTVTVDD1605 pKa = 3.46GGLSTANNTTYY1616 pKa = 11.41AFADD1620 pKa = 4.24GATLNLNQLIAQTQSTPVTLAGQEE1644 pKa = 4.23GNLVFAAHH1652 pKa = 6.83GNASLVGSSGNDD1664 pKa = 3.24TLYY1667 pKa = 11.11GWGNSDD1673 pKa = 3.55TLVAGSGNNTLYY1685 pKa = 11.28GEE1687 pKa = 4.62DD1688 pKa = 4.0ANDD1691 pKa = 3.38ILVGGTGLDD1700 pKa = 3.4TLYY1703 pKa = 11.16GGTGNDD1709 pKa = 3.09TMIAGTGEE1717 pKa = 3.91NTLVGGQSNDD1727 pKa = 2.95TFMLTEE1733 pKa = 4.56GGVTTINSSTQSGIEE1748 pKa = 4.09TLWLPEE1754 pKa = 3.91KK1755 pKa = 10.22MRR1757 pKa = 11.84LSDD1760 pKa = 4.05FFAVQVGQDD1769 pKa = 3.48LYY1771 pKa = 10.98INSNSLDD1778 pKa = 3.29TTTIINGYY1786 pKa = 10.19FNTQPQSVGWVLGGDD1801 pKa = 3.35NDD1803 pKa = 4.57SPVFLQTWVAAQQANLTGGAIDD1825 pKa = 3.91YY1826 pKa = 10.19SSKK1829 pKa = 10.48ISALEE1834 pKa = 3.75QAYY1837 pKa = 9.31KK1838 pKa = 10.77AQLNADD1844 pKa = 3.72LTSIGKK1850 pKa = 9.55NGTWLDD1856 pKa = 3.84DD1857 pKa = 3.72SVGRR1861 pKa = 11.84ANVGDD1866 pKa = 4.23YY1867 pKa = 11.03YY1868 pKa = 11.49SNNASGVAGTVVNYY1882 pKa = 9.73LFNGVRR1888 pKa = 11.84LDD1890 pKa = 3.36KK1891 pKa = 10.68LTVSGGNLTLSSIDD1905 pKa = 4.12DD1906 pKa = 4.01NVDD1909 pKa = 3.03TTQVHH1914 pKa = 5.33EE1915 pKa = 4.4TTVTGFKK1922 pKa = 9.53TVPVYY1927 pKa = 10.97KK1928 pKa = 10.41LVQLTTGTVVDD1939 pKa = 4.43MGPPSSTGGGSNLSSDD1955 pKa = 4.52EE1956 pKa = 5.01LNLLPNGDD1964 pKa = 3.36VGFIVPGLMRR1974 pKa = 11.84EE1975 pKa = 4.31VQAGTISQAYY1985 pKa = 7.51TYY1987 pKa = 10.08QASTVDD1993 pKa = 3.41VQRR1996 pKa = 11.84TLNTYY2001 pKa = 10.63AITGDD2006 pKa = 3.5GGNDD2010 pKa = 3.37VIMMVSNDD2018 pKa = 3.56ASNGIQSASFMGTVNTGDD2036 pKa = 3.28GNVYY2040 pKa = 10.55VNLGTTSSINPDD2052 pKa = 3.61FGAGQDD2058 pKa = 3.82YY2059 pKa = 10.86SSPEE2063 pKa = 3.91PSSDD2067 pKa = 2.72RR2068 pKa = 11.84SFIVAGAGNDD2078 pKa = 3.81TLIGTDD2084 pKa = 3.54GADD2087 pKa = 3.64TIVGGSGFDD2096 pKa = 3.61YY2097 pKa = 10.57MDD2099 pKa = 4.53GGLGTNTYY2107 pKa = 8.58YY2108 pKa = 11.43VSMHH2112 pKa = 6.55GDD2114 pKa = 3.11ATDD2117 pKa = 4.54IIDD2120 pKa = 4.4DD2121 pKa = 4.03TGDD2124 pKa = 4.01MEE2126 pKa = 5.22NSWQIQEE2133 pKa = 4.57GYY2135 pKa = 10.69GGVVPNKK2142 pKa = 9.06TLVMPDD2148 pKa = 2.91GLLAKK2153 pKa = 9.91DD2154 pKa = 3.47LNYY2157 pKa = 10.63RR2158 pKa = 11.84IVQDD2162 pKa = 3.4PAYY2165 pKa = 8.86PGSSILQINYY2175 pKa = 7.06GTSNVWVVYY2184 pKa = 9.11QEE2186 pKa = 5.06GILEE2190 pKa = 4.14STMYY2194 pKa = 10.69GSNPAVLSIGVNRR2207 pKa = 11.84IAFSDD2212 pKa = 4.19GSTMTLDD2219 pKa = 3.37QFMAAAHH2226 pKa = 5.72QMADD2230 pKa = 3.75DD2231 pKa = 4.0YY2232 pKa = 10.34TPSVSASDD2240 pKa = 3.89QVLQLNQTVAVSGLFTASDD2259 pKa = 3.55TGSNAITWYY2268 pKa = 9.99RR2269 pKa = 11.84VSNSGIDD2276 pKa = 3.16SGYY2279 pKa = 8.73FTLNGKK2285 pKa = 8.59RR2286 pKa = 11.84QSSDD2290 pKa = 2.79APIYY2294 pKa = 8.44LTKK2297 pKa = 10.21PQLSGLQYY2305 pKa = 9.81VTGATAGDD2313 pKa = 4.2DD2314 pKa = 4.56LIQVSAFDD2322 pKa = 3.52GAAWSVVAPISIVTTSNNVLQATSSNQVLTGTAAAADD2359 pKa = 3.99VLIGGYY2365 pKa = 11.0ANDD2368 pKa = 3.95TLVGGGTQDD2377 pKa = 2.76TFFLRR2382 pKa = 11.84RR2383 pKa = 11.84GDD2385 pKa = 3.75GNVVVSEE2392 pKa = 4.43ASDD2395 pKa = 3.56TNGNNTLRR2403 pKa = 11.84FGGGVTSDD2411 pKa = 4.55DD2412 pKa = 4.46LQLTQQGSDD2421 pKa = 3.29VLVKK2425 pKa = 10.79YY2426 pKa = 7.43GTSSDD2431 pKa = 3.61SVLVKK2436 pKa = 10.87NLDD2439 pKa = 3.95TFSGTATIDD2448 pKa = 3.0KK2449 pKa = 10.11FQFADD2454 pKa = 4.38GSHH2457 pKa = 6.08SAYY2460 pKa = 10.47SSSGQGDD2467 pKa = 3.91FLVTNYY2473 pKa = 10.93DD2474 pKa = 3.3STGNKK2479 pKa = 9.08TGDD2482 pKa = 2.95QWQHH2486 pKa = 4.95TDD2488 pKa = 2.68GTTGFDD2494 pKa = 3.04RR2495 pKa = 11.84VASDD2499 pKa = 3.43GTTEE2503 pKa = 4.17TAVTTTNSDD2512 pKa = 2.68GSTYY2516 pKa = 10.09STDD2519 pKa = 3.19QIAYY2523 pKa = 10.4ANGTSQQSWSRR2534 pKa = 11.84SDD2536 pKa = 3.31GAAGSTNTNTAGVVKK2551 pKa = 10.33GSSSVSINGSQEE2563 pKa = 3.43IDD2565 pKa = 3.39SGSGHH2570 pKa = 6.09VLVGSPGADD2579 pKa = 3.21AISGSDD2585 pKa = 4.4DD2586 pKa = 3.32NALLIGGTGNDD2597 pKa = 4.21TITTGTGGNVIGFNLGDD2614 pKa = 3.89GQDD2617 pKa = 3.41TVVANAGDD2625 pKa = 4.23SNVLSLGGKK2634 pKa = 9.9FSYY2637 pKa = 11.26ADD2639 pKa = 3.85LAFQKK2644 pKa = 10.7NGNNLILDD2652 pKa = 4.02VSSSDD2657 pKa = 5.28AITLQDD2663 pKa = 3.58WYY2665 pKa = 10.92ASSDD2669 pKa = 3.55NQQLVTLQVIEE2680 pKa = 4.69AATADD2685 pKa = 3.75YY2686 pKa = 10.75SSRR2689 pKa = 11.84SIDD2692 pKa = 3.27TLKK2695 pKa = 9.11NTKK2698 pKa = 9.93VEE2700 pKa = 4.24TFDD2703 pKa = 3.61FQQLVEE2709 pKa = 5.1AFDD2712 pKa = 3.7QAQIDD2717 pKa = 4.05NPTRR2721 pKa = 11.84GAWSLSSSLLDD2732 pKa = 3.3AHH2734 pKa = 7.25LSNSDD2739 pKa = 3.15TTALGGDD2746 pKa = 3.84LAYY2749 pKa = 10.24EE2750 pKa = 3.95YY2751 pKa = 10.94GVRR2754 pKa = 11.84GNLTGFNVAAAEE2766 pKa = 4.09TVIANTQFATSPQNLHH2782 pKa = 6.15PWGSVSGTAAQIRR2795 pKa = 3.91

Molecular weight:
282.66 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|G0ABE2|G0ABE2_COLFT Putative oxidoreductase FAD/FMN-binding protein OS=Collimonas fungivorans (strain Ter331) OX=1005048 GN=CFU_1516 PE=4 SV=1
MM1 pKa = 7.91PKK3 pKa = 9.63MKK5 pKa = 9.83TKK7 pKa = 10.72SSAKK11 pKa = 9.15KK12 pKa = 9.67RR13 pKa = 11.84FRR15 pKa = 11.84VRR17 pKa = 11.84PGGTVKK23 pKa = 10.62RR24 pKa = 11.84GQAFKK29 pKa = 11.01RR30 pKa = 11.84HH31 pKa = 5.79ILTKK35 pKa = 9.78KK36 pKa = 3.98TTKK39 pKa = 10.23NKK41 pKa = 8.8RR42 pKa = 11.84QLRR45 pKa = 11.84GSVGVHH51 pKa = 4.65EE52 pKa = 4.79TNMASVSRR60 pKa = 11.84MLPTAA65 pKa = 4.04

Molecular weight:
7.34 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4429

0

4429

1527625

30

5651

344.9

37.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.84 ± 0.049

0.912 ± 0.012

5.173 ± 0.028

4.863 ± 0.038

3.758 ± 0.026

8.05 ± 0.048

2.201 ± 0.023

5.263 ± 0.026

3.961 ± 0.037

10.556 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.5 ± 0.018

3.361 ± 0.039

4.814 ± 0.03

4.427 ± 0.029

5.881 ± 0.042

6.222 ± 0.084

5.295 ± 0.06

7.064 ± 0.031

1.299 ± 0.013

2.561 ± 0.022

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski