Listeria phage LMTA-57

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Jasinkavirinae; Pecentumvirus; Listeria virus LMSP25

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 196 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A068CBC1|A0A068CBC1_9CAUD Uncharacterized protein OS=Listeria phage LMTA-57 OX=1486414 PE=4 SV=1
MM1 pKa = 8.12DD2 pKa = 5.25LNKK5 pKa = 10.08FLTDD9 pKa = 3.02VDD11 pKa = 5.18EE12 pKa = 4.49IASAYY17 pKa = 10.51GEE19 pKa = 4.11DD20 pKa = 3.55ANYY23 pKa = 9.69EE24 pKa = 3.62ISFIRR29 pKa = 11.84EE30 pKa = 3.9KK31 pKa = 11.11YY32 pKa = 9.66VDD34 pKa = 4.07LDD36 pKa = 3.63EE37 pKa = 5.53GAKK40 pKa = 9.61QDD42 pKa = 4.56CEE44 pKa = 3.97EE45 pKa = 4.04TDD47 pKa = 3.6FFEE50 pKa = 4.38GVEE53 pKa = 4.74YY54 pKa = 10.17ISQMQTGEE62 pKa = 4.24DD63 pKa = 3.72CFEE66 pKa = 4.16GYY68 pKa = 9.85ILRR71 pKa = 11.84KK72 pKa = 9.45IKK74 pKa = 9.58NTDD77 pKa = 2.4WCLCITYY84 pKa = 9.86VII86 pKa = 4.45

Molecular weight: 10.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A068C847|A0A068C847_9CAUD Uncharacterized protein OS=Listeria phage LMTA-57 OX=1486414 PE=4 SV=1
MM1 pKa = 7.77ANNTRR6 pKa = 11.84GNLPRR11 pKa = 11.84GYY13 pKa = 8.15TALGDD18 pKa = 3.61GSEE21 pKa = 4.12SHH23 pKa = 5.94KK24 pKa = 9.77TVEE27 pKa = 4.27RR28 pKa = 11.84ALKK31 pKa = 10.38GYY33 pKa = 7.88YY34 pKa = 9.19TVDD37 pKa = 3.97FSNIYY42 pKa = 9.91EE43 pKa = 4.34HH44 pKa = 5.52MTEE47 pKa = 3.98RR48 pKa = 11.84DD49 pKa = 3.36LEE51 pKa = 4.31VRR53 pKa = 11.84QAYY56 pKa = 10.09AKK58 pKa = 10.56DD59 pKa = 4.33LISQRR64 pKa = 11.84TGIPLDD70 pKa = 3.56MILFRR75 pKa = 11.84KK76 pKa = 8.42KK77 pKa = 8.62TEE79 pKa = 4.01KK80 pKa = 9.25QTLTAIDD87 pKa = 3.42EE88 pKa = 4.4VFYY91 pKa = 11.14VKK93 pKa = 10.5QGVKK97 pKa = 9.87TIGKK101 pKa = 9.59VSIRR105 pKa = 11.84SQRR108 pKa = 11.84LLSSNMLIIIYY119 pKa = 8.63MSKK122 pKa = 9.08SHH124 pKa = 6.15MPRR127 pKa = 11.84VVRR130 pKa = 11.84NTGMKK135 pKa = 9.78TYY137 pKa = 9.47TKK139 pKa = 10.09RR140 pKa = 11.84SKK142 pKa = 11.08SDD144 pKa = 2.68IRR146 pKa = 11.84VAKK149 pKa = 9.98RR150 pKa = 11.84QRR152 pKa = 11.84KK153 pKa = 3.95TTKK156 pKa = 8.87RR157 pKa = 11.84QSYY160 pKa = 9.68

Molecular weight: 18.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

196

0

196

39548

38

1309

201.8

22.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.768 ± 0.176

0.637 ± 0.06

5.99 ± 0.122

8.314 ± 0.245

3.891 ± 0.123

5.889 ± 0.231

1.474 ± 0.093

6.466 ± 0.179

8.731 ± 0.232

8.448 ± 0.2

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.45 ± 0.086

5.778 ± 0.129

2.835 ± 0.134

3.406 ± 0.213

4.076 ± 0.136

6.868 ± 0.174

6.311 ± 0.16

7.191 ± 0.163

0.976 ± 0.064

4.501 ± 0.145
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski