Gilliamella apicola SCGC AB-598-B02

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella; Gilliamella apicola

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1967 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A080KKX4|A0A080KKX4_9GAMM Uncharacterized protein OS=Gilliamella apicola SCGC AB-598-B02 OX=1445513 GN=GASC598B02_017370 PE=4 SV=1
MM1 pKa = 7.92KK2 pKa = 10.15DD3 pKa = 3.34QIMLAQQDD11 pKa = 3.65TNAIIEE17 pKa = 4.27EE18 pKa = 4.18LLEE21 pKa = 5.15DD22 pKa = 4.64GSDD25 pKa = 3.29PHH27 pKa = 8.25ALYY30 pKa = 10.15IIEE33 pKa = 4.36HH34 pKa = 6.84HH35 pKa = 6.84ISSQNFDD42 pKa = 4.16LLEE45 pKa = 4.29KK46 pKa = 10.66VAVEE50 pKa = 4.36AYY52 pKa = 9.72KK53 pKa = 10.69LGYY56 pKa = 9.4EE57 pKa = 4.15ATDD60 pKa = 3.65PDD62 pKa = 4.57EE63 pKa = 6.02DD64 pKa = 4.28VDD66 pKa = 3.9DD67 pKa = 4.49TGNVVIGFDD76 pKa = 3.36IVAEE80 pKa = 4.26SPLNAEE86 pKa = 5.42LINAQIAEE94 pKa = 4.82IITLTNQFGVNYY106 pKa = 9.22DD107 pKa = 2.73GWGTYY112 pKa = 10.12FEE114 pKa = 5.88DD115 pKa = 5.47GSDD118 pKa = 4.31DD119 pKa = 3.95FNEE122 pKa = 4.04VDD124 pKa = 5.19DD125 pKa = 5.29NMEE128 pKa = 4.12TLHH131 pKa = 6.9

Molecular weight: 14.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A080K635|A0A080K635_9GAMM Uncharacterized protein (Fragment) OS=Gilliamella apicola SCGC AB-598-B02 OX=1445513 GN=GASC598B02_000450 PE=4 SV=1
MM1 pKa = 7.48GKK3 pKa = 9.28IFNTNYY9 pKa = 9.57RR10 pKa = 11.84AYY12 pKa = 9.38GTRR15 pKa = 11.84RR16 pKa = 11.84LQAEE20 pKa = 4.28LRR22 pKa = 11.84KK23 pKa = 10.1QGITVSRR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84IGRR35 pKa = 11.84IMAKK39 pKa = 10.08NGWVSKK45 pKa = 6.88YY46 pKa = 7.4TCKK49 pKa = 10.4KK50 pKa = 9.37YY51 pKa = 10.7CIHH54 pKa = 6.13TEE56 pKa = 3.77KK57 pKa = 11.02SNEE60 pKa = 4.09SPVGNEE66 pKa = 3.74LNRR69 pKa = 11.84EE70 pKa = 4.03FNIGQPRR77 pKa = 11.84KK78 pKa = 9.91ILVTDD83 pKa = 3.67LTYY86 pKa = 11.18VRR88 pKa = 11.84VKK90 pKa = 10.53QRR92 pKa = 11.84WHH94 pKa = 5.38YY95 pKa = 9.94FCVIVDD101 pKa = 3.36ISNRR105 pKa = 11.84EE106 pKa = 3.64IVGRR110 pKa = 11.84SAGRR114 pKa = 11.84HH115 pKa = 3.65KK116 pKa = 9.51TAALVMQAMSQIPMNLQTIEE136 pKa = 4.73LFHH139 pKa = 7.14SDD141 pKa = 3.49RR142 pKa = 11.84GNN144 pKa = 2.98

Molecular weight: 16.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1967

0

1967

494925

20

3876

251.6

28.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.907 ± 0.064

1.143 ± 0.02

5.376 ± 0.044

5.613 ± 0.058

4.45 ± 0.048

5.974 ± 0.068

2.075 ± 0.029

8.66 ± 0.057

6.689 ± 0.056

10.312 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.391 ± 0.032

5.76 ± 0.052

3.628 ± 0.035

4.496 ± 0.05

3.819 ± 0.042

6.432 ± 0.051

5.315 ± 0.032

6.063 ± 0.05

1.146 ± 0.021

3.75 ± 0.043
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski