Beihai tombus-like virus 7

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KFQ2|A0A1L3KFQ2_9VIRU C2H2-type domain-containing protein OS=Beihai tombus-like virus 7 OX=1922728 PE=4 SV=1
MM1 pKa = 7.66HH2 pKa = 7.68SITCPHH8 pKa = 6.11CQKK11 pKa = 10.36VFEE14 pKa = 4.65FPSKK18 pKa = 9.95RR19 pKa = 11.84KK20 pKa = 9.94ASIRR24 pKa = 11.84EE25 pKa = 3.93HH26 pKa = 6.76LLAEE30 pKa = 4.69HH31 pKa = 6.06PHH33 pKa = 4.6IHH35 pKa = 6.29LRR37 pKa = 11.84CEE39 pKa = 3.74QRR41 pKa = 11.84GAAEE45 pKa = 4.15TNRR48 pKa = 11.84VWFRR52 pKa = 11.84CVLCDD57 pKa = 3.31EE58 pKa = 5.0TYY60 pKa = 11.51NDD62 pKa = 3.45LSVYY66 pKa = 9.52EE67 pKa = 3.98LHH69 pKa = 7.15LVTHH73 pKa = 6.72HH74 pKa = 6.23EE75 pKa = 4.08AEE77 pKa = 4.65QMDD80 pKa = 4.55FDD82 pKa = 5.5SNAVPLDD89 pKa = 3.93TMDD92 pKa = 3.88KK93 pKa = 8.93TCKK96 pKa = 10.18LHH98 pKa = 6.04MLRR101 pKa = 11.84QRR103 pKa = 11.84RR104 pKa = 11.84TCKK107 pKa = 10.26RR108 pKa = 11.84EE109 pKa = 3.42PDD111 pKa = 3.27LFGALEE117 pKa = 4.06ISHH120 pKa = 6.0VV121 pKa = 3.6

Molecular weight: 14.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KFN4|A0A1L3KFN4_9VIRU RNA-directed RNA polymerase OS=Beihai tombus-like virus 7 OX=1922728 PE=4 SV=1
MM1 pKa = 7.08QLASARR7 pKa = 11.84QMSSHH12 pKa = 6.16KK13 pKa = 10.2VVPSADD19 pKa = 3.83DD20 pKa = 4.5GYY22 pKa = 11.88GWDD25 pKa = 4.63CPTLQLASQNSGFRR39 pKa = 11.84QIGPGWDD46 pKa = 2.96TMTSQRR52 pKa = 11.84NRR54 pKa = 11.84GSARR58 pKa = 11.84GSQAYY63 pKa = 8.86VVHH66 pKa = 6.93LYY68 pKa = 10.96AHH70 pKa = 7.45LSTNQSGWVARR81 pKa = 11.84SYY83 pKa = 11.9AFLPTSAKK91 pKa = 9.6MISGPSRR98 pKa = 11.84FILLPLMDD106 pKa = 3.82YY107 pKa = 7.57TARR110 pKa = 11.84SPIAGAHH117 pKa = 5.66AMNFLLYY124 pKa = 10.54AIEE127 pKa = 4.0

Molecular weight: 13.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1567

121

1036

391.8

44.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.658 ± 0.979

2.616 ± 0.599

4.786 ± 0.842

5.169 ± 0.86

2.999 ± 0.308

6.126 ± 1.057

3.063 ± 1.354

4.659 ± 0.839

3.765 ± 0.377

9.892 ± 1.567

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.425 ± 0.909

3.765 ± 0.703

6.509 ± 0.876

4.212 ± 0.423

8.168 ± 1.253

7.084 ± 0.933

5.807 ± 0.457

6.445 ± 0.618

1.659 ± 0.26

3.127 ± 0.701
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski